Pairwise Alignments

Query, 581 a.a., ABC transporter from Pseudomonas simiae WCS417

Subject, 617 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  230 bits (587), Expect = 1e-64
 Identities = 180/580 (31%), Positives = 286/580 (49%), Gaps = 53/580 (9%)

Query: 33  LAVALLVPILHALFVGDLPSAMTWLAGLAAMVVLTCIAHYQQAMQG---------FALAL 83
           L +A L  ++  LF      A++     A ++ L  IA Y  A  G            A 
Sbjct: 49  LLLAKLAGVVVPLFYKHAVDALSVPERAAIVLPLGVIAAYGLARLGNLAFTEIRDLLFAR 108

Query: 84  LVLTTLHD---RLGQHLVSLPLGWFNSEKVGRLSRSATSGTLMVTGLFAHYL---GPVVS 137
           ++   +H    R  +HL  L L +    + G LSR    GT  +  +   ++   GP + 
Sbjct: 109 VIERAIHVLSLRTFRHLHGLSLRFHLDRQTGGLSRVIERGTRAIEVVLRQFVLRAGPSLI 168

Query: 138 GVVVPATVALTLFVFDWRLGLTAVLCAPLIYFAHHWSAA----------AIGSNDARVEA 187
            +V+   V  TL+  DW   +  V  A  +Y A  W+ A          ++ ++DA   +
Sbjct: 169 ELVMVCGVLWTLY--DWTYAVVMV-GALAVYVA--WTLAITEWRLDFRRSMNTHDAEASS 223

Query: 188 AA--TLAGNRVVE-FARYQQVLRAFGRTQDGYAPLQAANQAQKQAGGSMLSQTFPKLLAG 244
            A  +L     V+ F   +   + F R    Y  +   +        S+L+     +++ 
Sbjct: 224 KAIDSLINYETVKYFGNEEHEAKRFDRALSAYEEVAVKSHRSL----SLLNVGQSAIISL 279

Query: 245 GLTVQLAFALLVGVGITLAAHGEIDAIQLVALLALAARFVGPLAEAAARSGLLRMAGNDL 304
            L   +  A +   G  +     +     +  L +   F+G +     + GL+     D+
Sbjct: 280 SLVAVMIMAAVDIRGGRMTPGDFVLVNTYLLQLYVPLNFLG-MVYREVKQGLV-----DM 333

Query: 305 DQLVGILREPSLPEPVVSQPLSAP------GSLAFEQVSFAYPSGPTVLQDLTFSAPAHS 358
           + L G++  P    P V+ P +A       G++ FE V FAY     VL+ ++   PA  
Sbjct: 334 EVLFGLIDRP----PEVADPANAADLVVRGGAVRFEGVRFAYNPEREVLKGVSLEIPAGG 389

Query: 359 MTAIVGASGSGKTTVTRLLMRFFDTTTGSVKVGGVDVREQSSEALMAQLSLVMQDVYLFD 418
             A+VG SG+GK+T++RLL RF+D T G V + G D+R+ +  +L   + +V QD  LF+
Sbjct: 390 TLAVVGHSGAGKSTLSRLLFRFYDVTGGRVLIDGQDLRDVTQASLRRAIGIVPQDTVLFN 449

Query: 419 DSLEANIRVGSPDASARDVAEAARLAGVDEIVARLPQGWNTPVGEGGASLSGGERQRVSL 478
           D++  NI  G P AS ++V  AARLA + + V  L  G++T VGE G  LSGGE+QRV++
Sbjct: 450 DTIGYNIAYGRPGASRQEVERAARLAAIHDFVQSLKNGYDTQVGERGLKLSGGEKQRVAI 509

Query: 479 ARALLKRAPIVLLDEATAALDPHNEAFVQAAIQRLMQNSTVLVIAHRLPTIMAADQILVL 538
           AR +LK   I++LDEAT+ALD H E  +Q A++ + +  T LVIAHRL T++ AD+ILVL
Sbjct: 510 ARTILKDPAILILDEATSALDSHTEREIQGALRDVSRGRTTLVIAHRLSTVIDADRILVL 569

Query: 539 DQGRLVESGTHAQLLSLNGRYAGFWHDRQRAGGWRLNAQA 578
           D GR+ ESG+H  LL   G YA  W  +Q++    ++ +A
Sbjct: 570 DGGRVAESGSHDDLLRAEGLYAALWRKQQQSSSLAVDEEA 609