Pairwise Alignments

Query, 581 a.a., ABC transporter from Pseudomonas simiae WCS417

Subject, 565 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  288 bits (736), Expect = 5e-82
 Identities = 195/519 (37%), Positives = 272/519 (52%), Gaps = 23/519 (4%)

Query: 60  LAAMVVLTCIAHYQQAMQGFALALLVLTTLHDRLGQHLVSLPLGWFNSEKVGRLSRSATS 119
           LAA++    +  Y   M  F  A  ++    +++  H+  LPLG     ++G L+   T 
Sbjct: 60  LAALLAGQMLCSYLGQMACFLGAYDLMIGYREQVIDHIGRLPLGVLQKRRIGHLAAIVTD 119

Query: 120 GTLMVTGLFAHYLGPVVSGVVVPATVALTLFVFDWRLGLTAVLCAPLIYFAHHWSAAAIG 179
               V  +F H    +V+    P      L   DWRL L  ++  P+     +   AA G
Sbjct: 120 DVKRVEEIFTHVAIDLVAAASAPLLFLAVLTWVDWRLSLALMVTLPMAIIGLN---AARG 176

Query: 180 SNDARVEAAATLA---GNRVVEFARYQQVLRAFGRTQDG-------YAPLQAANQAQKQA 229
              AR     TL       +VEF    + LR F +T          +A L+  +   +  
Sbjct: 177 FFLARGRTKQTLVQETSGLIVEFVTGLKTLRLFNQTAPWLDRLDRRFAALREISLGVEAW 236

Query: 230 GGSMLSQTFPKLLAGGLTVQLAFALLVGVGITLAAHGEIDAIQLVALLALAARFVGPLAE 289
           GG  + Q +   L GGL      +LL+  G  LA  G +D +  V    +A + + PL +
Sbjct: 237 GGGSI-QLYRLCLEGGLV-----SLLLTAG-WLANRGALDPLAWVLFALVAGKLLEPLLD 289

Query: 290 AAARSGLLRMAGNDLDQLVGILREPSLPEPVVSQPLSAPGSLAFEQVSFAYPSGPTVLQD 349
           AAA    LR+      ++  +  EP LPE   +  L+A G +AF+ VSF Y     VL+D
Sbjct: 290 AAAFLTELRLMVLAEGRIAALRAEPLLPEGTAT--LAAAGEVAFQNVSFRYDDA-WVLRD 346

Query: 350 LTFSAPAHSMTAIVGASGSGKTTVTRLLMRFFDTTTGSVKVGGVDVREQSSEALMAQLSL 409
           ++F   A +MTAIVG SGSGKTT+  LL RFFD   G+V + G D+R   ++ L   L  
Sbjct: 347 VSFRVGAGTMTAIVGPSGSGKTTLLHLLARFFDPQAGAVTIAGRDIRTLDTQDLYRHLGF 406

Query: 410 VMQDVYLFDDSLEANIRVGSPDASARDVAEAARLAGVDEIVARLPQGWNTPVGEGGASLS 469
           V QDV LFD +L  N+ +G P A    VA A   A  D  +ARLP G  + +GE G  LS
Sbjct: 407 VFQDVQLFDGTLLENLLIGRPGADEAAVAAACTAAYCDPFLARLPDGLASRIGENGQRLS 466

Query: 470 GGERQRVSLARALLKRAPIVLLDEATAALDPHNEAFVQAAIQRLMQNSTVLVIAHRLPTI 529
           GGERQR+S+ARA+LK API+LLDEATA++DP  +  +Q A+  L Q  TV+++AHRL TI
Sbjct: 467 GGERQRLSIARAILKDAPILLLDEATASVDPAAQYEIQRALSHLAQGRTVIMVAHRLHTI 526

Query: 530 MAADQILVLDQGRLVESGTHAQLLSLNGRYAGFWHDRQR 568
             ADQILVLDQGR++E G H  LL+  G YA  W ++ R
Sbjct: 527 RHADQILVLDQGRILEQGRHDDLLAQAGLYAALWREQSR 565