Pairwise Alignments

Query, 581 a.a., ABC transporter from Pseudomonas simiae WCS417

Subject, 576 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  330 bits (847), Expect = 7e-95
 Identities = 196/572 (34%), Positives = 317/572 (55%), Gaps = 10/572 (1%)

Query: 1   MIRSLVTLLGPPHASRLYRYLAWLVTSAVLQGLAVALLVPILHALFVGDLPSAMTWLAGL 60
           ++  ++ +   PHA+R+ R + + +       +  A L   L  +F G+ P  M  + GL
Sbjct: 2   IVLDVLRMADGPHAARVRRGMLFKIGETFCAAVPFAALYGALMLVF-GEAPFGMGEILGL 60

Query: 61  AAMVVLTCIAHYQQAMQGFALALL----VLTTLHDRLGQHLVSLPLGWFNSEKVGRLSRS 116
             +V       +   + G   A +    ++      +  HL  LPLG+F  ++ G L+ +
Sbjct: 61  TGLVAAGLAGQFAFGVLGARTAFISGYGMMGDFRFTMMDHLSKLPLGFFTFQRTGALTTT 120

Query: 117 ATSGTLMVTGLFAHYLGPVVSGVVVPATVALTLFVFDWRLGLTAVLCAPLIYFAHHWSAA 176
                 MV  +F   +  +V+G  +P  + + L V DWR+GL AV   PL +     +  
Sbjct: 121 VAENVKMVEEMFTKVVNEIVAGFTLPLFIGILLVVIDWRMGLAAVASVPLAFAVLRLTQG 180

Query: 177 AIGSNDA-RVEAAATLAGNRVVEFARYQQVLRAFGRTQDGYAPLQAANQAQKQAGGSMLS 235
                 A RV+  A ++G R++E+    +V+R +G     +A L+ +   Q++   ++  
Sbjct: 181 RFMRLSAKRVDVHAEVSG-RLLEYIDGLRVIRGYGLAGAKFASLRDSLDTQRRVSVALEI 239

Query: 236 QTFPKLLAGGLTVQLAFALLVGVGITLAAHGEIDAIQLVALLALAARFVGPLAEAAARSG 295
           Q    ++A  + +++ F  L+ VG      G +     +  + LA +F  P+  +     
Sbjct: 240 QGGLGIMAMAVVLEMGFIALLMVGAFAMLGGALSPASYLMAMVLAQKFYAPITRSLMLLV 299

Query: 296 LLRMAGNDLDQLVGILREPSLPEPVVSQPLSAPGSLAFEQVSFAYPSG--PTVLQDLTFS 353
            ++     L ++  +L  P LPEPV  + + +  ++ F+ VSF Y        L ++TF+
Sbjct: 300 DIKYLSLALKRVQTLLNAPRLPEPVEPK-VPSNNAIVFDAVSFRYDEAGDEPALSEVTFT 358

Query: 354 APAHSMTAIVGASGSGKTTVTRLLMRFFDTTTGSVKVGGVDVREQSSEALMAQLSLVMQD 413
               + TA+VG SG+GK+TV  L+ RF D T+G+V++GGVD+R+ +S+ LM ++S+V+QD
Sbjct: 359 LREGTTTALVGPSGAGKSTVAHLIARFHDVTSGAVRIGGVDLRDMASDELMRRVSMVLQD 418

Query: 414 VYLFDDSLEANIRVGSPDASARDVAEAARLAGVDEIVARLPQGWNTPVGEGGASLSGGER 473
           V+LFDD++  NIR+G  DAS  DV  AAR A     +  LPQG+  P+GEGGA LSGG++
Sbjct: 419 VHLFDDTVANNIRIGRSDASDEDVVAAARHAQCHAFIEALPQGYQAPIGEGGAWLSGGQK 478

Query: 474 QRVSLARALLKRAPIVLLDEATAALDPHNEAFVQAAIQRLMQNSTVLVIAHRLPTIMAAD 533
           QR+S+ARALLK APIVLLDE+TA+LDP  EA    A + L    TVLVIAHRL T++ AD
Sbjct: 479 QRLSIARALLKDAPIVLLDESTASLDPECEAAFHQAFKILAAGKTVLVIAHRLHTVVNAD 538

Query: 534 QILVLDQGRLVESGTHAQLLSLNGRYAGFWHD 565
           QI+V+++GR+V++GTH  L++  G Y   W D
Sbjct: 539 QIVVMERGRVVQTGTHGDLIASPGLYRTLWTD 570