Pairwise Alignments

Query, 581 a.a., ABC transporter from Pseudomonas simiae WCS417

Subject, 600 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella sp. ANA-3

 Score =  212 bits (540), Expect = 3e-59
 Identities = 162/535 (30%), Positives = 266/535 (49%), Gaps = 35/535 (6%)

Query: 50  LPSAMTWLAGLAAMVVLTCIAHYQQAMQGFA----------LALLVLTTLHDRLGQHLVS 99
           LP++  + A    +++   +     +++GFA          ++  ++  +  ++ +H +S
Sbjct: 68  LPTSQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYLS 127

Query: 100 LPLGWFNSEKVGRLSRSATSGTLMVTGLFAHYLGPVV-SGVVVPATVALTLFVFDWRLGL 158
           LP+ + + E  G L    T  T  +       L  +V  GV V   +AL +F   W+L L
Sbjct: 128 LPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVIGMLAL-MFYNSWKLSL 186

Query: 159 TAVLCAPLIYFAHHWSAAAIGSNDARVEAAATLAGNRVVEFARYQQVLRAFGRTQDGYAP 218
             ++  P++       +        +++ A         +  +  + + AFG  +   A 
Sbjct: 187 CILVIGPIMGLVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETAR 246

Query: 219 LQAAN-----QAQKQAGGSMLSQTFPKLLAGGLTVQLAFALLVGVGITLAAHGEIDAIQL 273
               N     Q  K A    +SQ  P ++  G +  LAF L      ++ A  ++ A   
Sbjct: 247 FAKVNDRNRHQNMKLAVAQAISQ--PLIMVIG-SFALAFVLYAASLDSMKA--DLTAGTF 301

Query: 274 VALLALAARFVGPL-----AEAAARSGLLRMAGNDLDQLVGILREPSLPEPVVSQPLSAP 328
             +L      + P+       A  + G+   A   + +L+  L E       V +   A 
Sbjct: 302 ATILGAMMAMLQPIKNLTRVNAEFQRGIA--ACTTVFELLDTLPESDTGTYTVKR---AK 356

Query: 329 GSLAFEQVSFAYPSGPT-VLQDLTFSAPAHSMTAIVGASGSGKTTVTRLLMRFFD-TTTG 386
           G+L F+ VSF+Y       L ++ F        A+VG SGSGK+T+  L+ RF+    +G
Sbjct: 357 GNLRFDNVSFSYDGQERRALDNIDFEVTQGQTLALVGRSGSGKSTIASLVTRFYTGLESG 416

Query: 387 SVKVGGVDVREQSSEALMAQLSLVMQDVYLFDDSLEANIRVGSPDASARD-VAEAARLAG 445
            + +  V + + S ++L  Q++LV Q V LF+D++  NI    P  + R+ + +AA LA 
Sbjct: 417 DILLDDVSIYDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQAATLAH 476

Query: 446 VDEIVARLPQGWNTPVGEGGASLSGGERQRVSLARALLKRAPIVLLDEATAALDPHNEAF 505
             E + +LP+G +T VGE G  LSGG+RQR+++ARA+L+ AP+++LDEAT+ALD  +E  
Sbjct: 477 AMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKA 536

Query: 506 VQAAIQRLMQNSTVLVIAHRLPTIMAADQILVLDQGRLVESGTHAQLLSLNGRYA 560
           +Q  +  L QN T +VIAHRL TI +ADQILV+DQGR+VE GTH  LL L G YA
Sbjct: 537 IQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYA 591