Pairwise Alignments

Query, 471 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 541 a.a., RND efflux system, outer membrane protein, NodT family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  250 bits (638), Expect = 1e-70
 Identities = 162/469 (34%), Positives = 245/469 (52%), Gaps = 16/469 (3%)

Query: 8   PSLLVLALSACA-VGPDYKTQTPEAANITA-AADAKQYDHAKFEGIWWQQFEDPTLNQLV 65
           P LL+  L+ACA VGPD+     +  ++   A+       A  +G WW  F DP L+ LV
Sbjct: 31  PVLLLTLLTACAKVGPDFSAPGGDVPDVWQDASHPVASSDADVDGTWWNTFNDPVLDSLV 90

Query: 66  TQALQGNRDLRVAFARLRAARAIRDDASNDAMPT-------ITSRASSDLAKGQIPGQTT 118
           T+A   N  L +A  R+  ARA    A  +  P        +T    SD A    P  TT
Sbjct: 91  TEARSANLSLHLAALRVFEARARLGAAVGNLYPQTQQGTGGLTWTHPSDRAP-TAPQPTT 149

Query: 119 KRVNSE--RYDLGLDMAWELDLFGRIQRNLEATDADQQAAEADLYQLQVTMIAELVDAYG 176
            R N +  +   GLD+AWELD +G+ +R +EA DAD +A+ AD     V++ AE+  +Y 
Sbjct: 150 GRDNPDYVQTSAGLDVAWELDFWGKFRRGIEAADADLRASMADHQTALVSVSAEVARSYI 209

Query: 177 QLRGAQLRERIALDNLKNQQESRTITVSLRDAGVGDQLDVERADARLAAVEASVPQLQAE 236
             R  Q +  IA  N+  Q+ES  I  +  + G   + D+ +A + L   EA +P L   
Sbjct: 210 LYRTVQKQLAIAETNVAIQRESLRIATARFNYGATSERDMRQALSLLRDTEARIPNLAHS 269

Query: 237 QVRERNRIATLLGQRPDKLSVDLGPKNLPAIAKALPIGDPGQLLQRRPDILSAERKLAAA 296
               RN +  LLG+ P  +S  LG   +P     + +G P  LL+RRPD+  A    A  
Sbjct: 270 LRETRNALCVLLGKAPQDISARLGDAPIPTAPTHVAVGIPADLLRRRPDVHKALATAAGQ 329

Query: 297 TARIGVAKADLFPRVSLSGFLGFTAGR--GSQIGSSAANAWAL--GPSITWAAFDLGSVR 352
            AR+GVAKAD +P  +L GF+GFTA       +G + +N +    GP ++   F+ G + 
Sbjct: 330 CARLGVAKADFYPAFTLGGFVGFTASNVGAFGLGDTFSNGFTAYGGPGLSLPLFNYGRIV 389

Query: 353 ARLRGADAEADGALATYEQQVLLALEESENAFSDYGKRQQRLVSLIRQSESSRAAADLAA 412
           + +R  DA    +L +Y + VL+AL E+E+A   + + Q R   L   +  +  +  LA 
Sbjct: 390 SNVRAQDARFQQSLTSYRETVLVALRETEDAIDRFIQAQGRTALLTESASDAARSMQLAL 449

Query: 413 IRYREGTVDFLVLLDAQRERLAAEDSQAQAEVDLYRGIVAIYKALGGGW 461
           I+Y+EG+ DF  +L A R+    ED+ A A+ ++ + +VA++KALGGGW
Sbjct: 450 IQYQEGSTDFTTVLTAARDLATREDALAAAKGEICQSLVAMFKALGGGW 498