Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 655 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N2E2

 Score =  811 bits (2096), Expect = 0.0
 Identities = 406/656 (61%), Positives = 493/656 (75%), Gaps = 12/656 (1%)

Query: 174 IVQAQPNSVLSDASVGKPKTRAKARKTALPEQFTPQLATLVDRAPEGDWQYEIKFDGYRM 233
           +  A+  S     +  +  T  KA +  LPE+ +PQLAT V+  P G+W+YE++F GYR+
Sbjct: 1   MANAESESARLSNAKSEATTARKAPQNRLPERLSPQLATPVEEPPTGEWRYEVQFHGYRL 60

Query: 234 LARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQN 293
           LARI+ GEVRLF RN  DWTE L     AL    L DSWLDGE+V L+  G  DF AL+ 
Sbjct: 61  LARIEQGEVRLFNRNHQDWTERLKLHADALAGWNLGDSWLDGELVLLDETGRSDFAALRQ 120

Query: 294 AFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKEALAGSRSTLLRYSEAFTAHHR 353
           AFDI R++D++Y+LFDAPFLNG D RQAPVEERRAALK+AL  + S  LR+SE+F+A   
Sbjct: 121 AFDISRTVDMLYFLFDAPFLNGVDLRQAPVEERRAALKKALGNNASKRLRFSESFSASPH 180

Query: 354 DIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGAL 413
           D+FESA  LAL+ V+GKR+GSPY S+RSADW+KLKCRL Q FVIVG+TRPQG RSGFGAL
Sbjct: 181 DMFESAIALALDSVVGKRVGSPYRSQRSADWVKLKCRLRQAFVIVGFTRPQGRRSGFGAL 240

Query: 414 LLAVNNDTGLVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPT 473
           LLAVN  +GLVYAGRVGTGF Q  ++ ++AQL   + ETSPLA PL+  Q RGV WV+P 
Sbjct: 241 LLAVNGPSGLVYAGRVGTGFSQTQIQQLHAQLCAQQRETSPLALPLNGVQGRGVQWVEPG 300

Query: 474 LVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQPRTVHSKKPVKKTSR-------- 525
           L  +V+F EWT ++ VRQA F+G  T+ P  +VV EQP  +  K    KT R        
Sbjct: 301 LTCEVEFIEWTGDNQVRQAIFLGFSTETPANKVVREQPLPI--KSTTAKTQRRSKTRAAK 358

Query: 526 --DVNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQ 583
              V ITHPDRVID  SG QK +LAQ+Y  I+ WILP L+ RPV+LLRAP+GI  EQFFQ
Sbjct: 359 VDGVTITHPDRVIDSVSGVQKAELAQYYLDIAPWILPHLKQRPVALLRAPDGIGEEQFFQ 418

Query: 584 KHSERLAIPNIKQLDQSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDL 643
           KH++RL IP+IKQLD  LDPGHA LMEID++ AL+ A QMG+VE HTW AT D+IETPDL
Sbjct: 419 KHADRLDIPHIKQLDPRLDPGHAALMEIDDIHALVSAAQMGTVELHTWTATHDRIETPDL 478

Query: 644 FVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVK 703
           FVLDLDPDP+LPW AM+EA  +TL+VLDELGLQAF+KTSGGKG+H+IVPLAR + W+T K
Sbjct: 479 FVLDLDPDPSLPWSAMIEATHMTLAVLDELGLQAFLKTSGGKGMHVIVPLARSEGWDTTK 538

Query: 704 AFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSV 763
           AFAK I+QF+T Q+PER TAT G KNRVGKIF+DYLRNARGASTVAAYSVRARPGLPVSV
Sbjct: 539 AFAKAISQFLTRQMPERITATMGQKNRVGKIFVDYLRNARGASTVAAYSVRARPGLPVSV 598

Query: 764 PVSREELEGLRGAQQWTVANVLQRLNALKADPWAGYANRQKISKKMWDKLGAHPPE 819
           P++R EL  LR AQQW +   L+R   L ADPW GY +RQ+I+ +MW++L A  PE
Sbjct: 599 PIARAELPTLRNAQQWDIYTALERAKGLGADPWEGYHHRQRITARMWEQLDAQKPE 654