Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 878 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N2E2

 Score =  914 bits (2362), Expect = 0.0
 Identities = 479/877 (54%), Positives = 592/877 (67%), Gaps = 69/877 (7%)

Query: 2   SKPLSEYNRKRDFGITAEPAGSAPAGKRK-ASALSFVIQKHDARNLHYDFRLELDGVLLS 60
           SK L +YNR RDF  T EPA        K A AL F IQKHDA  LHYDFRLELDG L S
Sbjct: 3   SKTLDDYNRMRDFAATPEPAAKRSRQSAKTAHALQFCIQKHDASRLHYDFRLELDGALKS 62

Query: 61  WAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRK 120
           WAVPKGPSLDP  KRLAVHVEDHPL Y  FEG+IP G YGAGDVIVWDRG+W P  +P +
Sbjct: 63  WAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPQGDPHE 122

Query: 121 AYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPN 180
           AY  G+LKF L GEKLSG W LVRT + G   +EQW LIK +D  AR   +YD+VQA+P+
Sbjct: 123 AYEKGRLKFELQGEKLSGLWNLVRTHMPGK--QEQWFLIKHQDQAARPESEYDVVQAEPD 180

Query: 181 SVLSDASVGKPKTRAKARKTA----------------------------LPEQFTPQLAT 212
           SVLSD ++  PK R KA   A                            LP+   P+LAT
Sbjct: 181 SVLSDRTL-VPKRRGKAAAKAVKQPEKAVRPKSPKRPSKTTLSGAVAGPLPDTLKPELAT 239

Query: 213 LVDRAPEGDWQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSW 272
           LV+ AP+G+W YEIKFDGYR++ARI+ G+VRL TRNGHDWT  LP Q +AL AL L+ +W
Sbjct: 240 LVESAPDGEWLYEIKFDGYRVMARIENGDVRLLTRNGHDWTHKLPSQAEALAALGLESAW 299

Query: 273 LDGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKE 332
           LDGE+V  N  G+PDFQALQNAF+ G S  I YYLFD P+LNG D R  PV+ERRAAL  
Sbjct: 300 LDGEMVVANDQGVPDFQALQNAFEAGSSGKIAYYLFDVPYLNGMDLRNVPVQERRAALAA 359

Query: 333 ALAGSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLS 392
            L  + S LLR+S+AF  +   +  SAC + +EG+IGKR+GS YVSRRS DWIKLKC+  
Sbjct: 360 VLESNESPLLRFSDAFEENPEALLNSACQMQMEGLIGKRIGSTYVSRRSNDWIKLKCKNR 419

Query: 393 QEFVIVGYTRPQGSRSGFGALLLAVNN-DTG-LVYAGRVGTGFDQAALKAIYAQLTPLEC 450
           QEFV+VG++ P+G+RS FGALLL +++ D+G L YAG+VGTGF++  LK+IY QL PLE 
Sbjct: 420 QEFVVVGFSEPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQQLLPLET 479

Query: 451 ETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQ 510
           + + +  P +  +A+GVHW++P L+A+V FAE T++  VR A F GLR DKP   +  E 
Sbjct: 480 KKAAVVNPPTGYEAKGVHWLEPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITQEL 539

Query: 511 PRTVHSKKPVKKTSR--------------------------------DVNITHPDRVIDK 538
            + V      KK                                    V ITHP+RVID 
Sbjct: 540 AKPVKKNATAKKAKAKAKAKAKAKDEPGATPARTKSKAKAKAPALDCKVRITHPERVIDA 599

Query: 539 HSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLD 598
            SGT K QLA++Y +++++ILP L  RPV+L+RAP+GI GE FFQK+ ERLAIP I  LD
Sbjct: 600 SSGTTKLQLAEYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNPERLAIPGITSLD 659

Query: 599 QSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKA 658
           + L      +M I+N  ALIGAVQM +VE HTW ATS  +  PD FVLDLDPDPALPWK+
Sbjct: 660 KELT--GQPVMIINNAEALIGAVQMSTVELHTWNATSVDLNKPDRFVLDLDPDPALPWKS 717

Query: 659 MLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVKAFAKGIAQFMTEQLP 718
           M+EA QLTLSVLDELGL+AF+KTSGGKG+H++VPL R+  W+ VK F+  I   M + LP
Sbjct: 718 MVEATQLTLSVLDELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLP 777

Query: 719 ERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQ 778
           +RF+A SGPKNRVG+IFIDYLRN  GA+T+ AY+ R R GLPVSVP+ REE+  L+GA  
Sbjct: 778 DRFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANV 837

Query: 779 WTVANVLQRLNALKADPWAGY-ANRQKISKKMWDKLG 814
           W V NV +RL  +  +PWAG    RQ I+ +M  ++G
Sbjct: 838 WNVHNVHERLAEVGHEPWAGLKRTRQSITAEMRRRIG 874