Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 307 a.a., DNA polymerase LigD, polymerase domain from Pseudomonas stutzeri RCH2

 Score =  334 bits (857), Expect = 4e-96
 Identities = 159/302 (52%), Positives = 222/302 (73%), Gaps = 7/302 (2%)

Query: 519 PVKKTSRD------VNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRA 572
           P K+ S +      + I++P RVID  +GT K  LA++Y +++ W++P L  RP+S++RA
Sbjct: 2   PAKRKSTERPLVGGIGISNPQRVIDAATGTTKFALAEYYLSVADWLVPQLAGRPLSIVRA 61

Query: 573 PEGIEGEQFFQKHSERLAIPNIKQLDQSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWG 632
           PEGI GE FFQ+H  RL +P+++ L + LDP HARL++ DN+ A++ AVQMGSVEFHTW 
Sbjct: 62  PEGIGGESFFQRHCGRLKMPHMRALPKDLDPEHARLIQADNITAVLEAVQMGSVEFHTWN 121

Query: 633 ATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVP 692
           A SD+IE PD  + DLDPDPALPW  M++  +LTL++LDELGL+AF+KTSGG+G+H++VP
Sbjct: 122 ARSDRIERPDRVIFDLDPDPALPWSRMIDTTELTLALLDELGLRAFLKTSGGRGMHVVVP 181

Query: 693 LARRDNWETVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYS 752
           + RR +W+ V++FA+G+ Q +  Q PER     G +NRVG+IF+DYLRN RGASTVAA+S
Sbjct: 182 IERRHDWDCVRSFAQGVTQRLGRQHPERIACKMGAQNRVGRIFVDYLRNQRGASTVAAFS 241

Query: 753 VRARPGLPVSVPVSREELEGLRGAQQWTVANVLQRLNALKADPWAGY-ANRQKISKKMWD 811
           VRARPGL VS+PVS +E+  L GA QW + N    L+   ADPWA Y + RQ+++  + +
Sbjct: 242 VRARPGLGVSLPVSLDEMRQLEGADQWRLGNARAYLSERGADPWAEYGSTRQRLTSTLLE 301

Query: 812 KL 813
            L
Sbjct: 302 TL 303