Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 865 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  588 bits (1515), Expect = e-172
 Identities = 344/866 (39%), Positives = 481/866 (55%), Gaps = 68/866 (7%)

Query: 2   SKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSW 61
           ++PLSEYNR+RDF  T+EP G A A +   + + F++QKH A  LHYDFRLE +GVL SW
Sbjct: 5   NEPLSEYNRRRDFTRTSEPKG-AVARRSGDNRMRFLVQKHAATRLHYDFRLEWEGVLKSW 63

Query: 62  AVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRKA 121
           AV +GPSL+P  KRLAV  EDHPL+YG FEG+IP G+YG G V++WD G W+P D+P KA
Sbjct: 64  AVTRGPSLNPEDKRLAVRTEDHPLAYGDFEGTIPKGEYGGGTVMLWDTGWWEPEDDPSKA 123

Query: 122 YAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNS 181
              GKL F L G ++ G WALVR R +    +E WLL+KE D  A S D   ++     S
Sbjct: 124 LKKGKLSFKLHGSRMKGGWALVRMRPREGEKRENWLLVKETDDVA-SDDGESLINENITS 182

Query: 182 VLS------------------------------------DASVGKPKTRAKARKTALPEQ 205
           +++                                    + + GK  TR  + K  LP  
Sbjct: 183 IVTGRTMEEIAEGRGEKRARVWHSNKSISANLKAGAIAENGNAGKRATRKASGK--LPAF 240

Query: 206 FTPQLATLVDRAPEGD-WQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQ 264
             PQLATLV + P GD W  E KFDGYR++  + AG VR +TRNG DWTE  P    AL 
Sbjct: 241 KAPQLATLVTKVPAGDAWLNEAKFDGYRLVCAVGAGTVRCYTRNGLDWTEKFPAIAAALA 300

Query: 265 ALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVE 324
            L  + + +DGEVV+L+ +G   F ALQ A   G S  +  Y FD   L+G+D  + P+ 
Sbjct: 301 ELDCQSALIDGEVVALS-EGGSTFSALQKALRTGASTRL--YAFDLIELDGKDLSRKPLV 357

Query: 325 ERRAALKEALA--GSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSA 382
           ER+  L+  L   G+ ST+ ++SE    +   +  + C    EG+I K   +PY S RS 
Sbjct: 358 ERKERLEALLQTLGATSTV-QFSEHVRGNGEHVLSAICKAGQEGIIAKEADAPYRSGRSR 416

Query: 383 DWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAGRVGTGFDQAALKAIY 442
            W+K+KC   QEFVI GYT        F +LL+       L+Y G VGTGF    ++ + 
Sbjct: 417 SWLKVKCTKRQEFVIGGYTPSSKKGRAFASLLVGTFEGGKLIYRGGVGTGFSGKTMEDLA 476

Query: 443 AQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKP 502
           A     + +TSP    +   + R   W++P LVA+V FAE+T +  VR  +F GLR DK 
Sbjct: 477 AAFAKRKRDTSPFDS-VPRERMRNSVWLEPDLVAEVDFAEFTADGHVRHGSFEGLREDKE 535

Query: 503 VAQVVHEQPRTVHSKKPVKKTSRD-----------------VNITHPDRVIDKHSGTQKQ 545
              V  E P+   ++    K+                    + I+HPDRV+ +  G  K 
Sbjct: 536 ARAVKLETPKPAEAEPETAKSKSSARTRKTPPVQGDADVLGIRISHPDRVLFEGQGITKI 595

Query: 546 QLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQSLDPGH 605
            LA++Y  +++ +LPF    PVSL+R P+G E   FFQKH+       I+++  +   G 
Sbjct: 596 DLARYYAVVAERMLPFAADHPVSLVRCPQGGERHCFFQKHASDGFPEAIREVPITESSGD 655

Query: 606 AR-LMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQ 664
               M I +   L+ AVQMG++EFH WG++ D++E PD  V DLDPDP++ ++ +  AA 
Sbjct: 656 TENYMYIHDAKGLVAAVQMGTLEFHIWGSSIDRLEKPDRLVFDLDPDPSVDFETVKAAAL 715

Query: 665 LTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVKAFAKGIAQFMTEQLPERFTAT 724
                L E+GL+     +GGKG+H+IVPL     WE  K FAK +A+ + E+ P+ F AT
Sbjct: 716 RLRDELAEIGLKTVPMVTGGKGVHVIVPLRPHAEWEEAKGFAKALARSIAERDPDNFVAT 775

Query: 725 SGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWTVANV 784
                R GKIFID+LRN RGA+ +A YS RAR G PV+ PV  +EL+GL  A  + + ++
Sbjct: 776 MSKAKRKGKIFIDWLRNDRGATAIAPYSTRARSGGPVATPVGWDELQGLEAANGFQIPDI 835

Query: 785 LQRLNALKADPWAGYAN-RQKISKKM 809
           ++R+ A   DPW       Q ++KK+
Sbjct: 836 IERIEA-GTDPWREIGKISQSLTKKI 860