Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 537 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

 Score = 52.8 bits (125), Expect = 5e-11
 Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 22/248 (8%)

Query: 214 VDRAPEGDWQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWL 273
           +D     D+  E K+DG R+      G  RL++R+G + +   P  ++A     + D  L
Sbjct: 214 LDGLDPADFAAEWKWDGIRVQLANVGGARRLYSRSGDEISSAFPEIIEAADITGVIDGEL 273

Query: 274 --DGEVVSLNGDG-LPDFQALQNAFDIGRSLDIVYYLF----DAPFLNGEDRRQAPVEER 326
              G + S    G   D Q   N   + R L   Y  F    D  F    D R  P   R
Sbjct: 274 LVGGTMRSNRATGTFADLQQRLNRKTVSRKLMDEYPAFIRAYDILFSGERDIRPEPFRVR 333

Query: 327 RAALKEALAGSR------STLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVS-R 379
           R AL   +  +       S L+ +S        ++  S  D  +EGV+ KRL SPY++ R
Sbjct: 334 REALSSLIEAASPQHFDLSPLVGFSS--WKELDELRSSPPDPVIEGVMLKRLDSPYMAGR 391

Query: 380 RSADWIKLK-CRLSQEFVIVGYTRPQGSRSGFGA-----LLLAVNNDTGLVYAGRVGTGF 433
               W K K    + + V++   R  G RS + +     +     +   LV  G+   GF
Sbjct: 392 AKGPWFKWKRAPFNIDAVLMYAQRGHGKRSSYYSDFTFGVWAEGEDGASLVPVGKAYFGF 451

Query: 434 DQAALKAI 441
             A L+ +
Sbjct: 452 TDAELEVL 459



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 204 EQFTPQLATLVDRAPEGDWQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKAL 263
           E+F P  A   +  P+  +  E+ F+G     R ++G    F R      + LPR    L
Sbjct: 469 ERFGPVRAVRAE--PDSGFVVEVAFEGLNRSTRHKSGVAMRFPRIARLRPDKLPRDADRL 526

Query: 264 QALK 267
           + L+
Sbjct: 527 ETLQ 530