Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 556 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  347 bits (890), Expect = 1e-99
 Identities = 215/518 (41%), Positives = 278/518 (53%), Gaps = 58/518 (11%)

Query: 1   MSKPLSEYNRKRDFGITAEPAGSA---PAGKRKASALSFVIQKHDARNLHYDFRLELDGV 57
           M+  LS+   KRDF  T EP+G A   P+ +R+     FVIQKHDA  LHYD RLELDGV
Sbjct: 1   MADNLSKDRAKRDFKKTREPSGEAQVKPSNRRR-----FVIQKHDATRLHYDLRLELDGV 55

Query: 58  LLSWAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDE 117
             SWAV KGPSLDPS KRLAV VEDHPL YG FEG++P GQYG G V++WDRG W+P   
Sbjct: 56  FKSWAVTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTVMLWDRGYWEPEGR 115

Query: 118 --PRKAYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKE-QWLLIKEKDPQARSADDYDI 174
             P +A   G  KFTL G++L G + LVR R    G K   WLLIK +D  +   +   I
Sbjct: 116 KSPEEALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAI 175

Query: 175 VQAQPNSVLSDASVG--------------------------------------KPKTRAK 196
           ++    SV S  S+                                       K   R  
Sbjct: 176 LEENATSVASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDV 235

Query: 197 ARKTA--LPEQFTPQLATLVDRAPEGD-WQYEIKFDGYRMLARIQAGEVRLFTRNGHDWT 253
           A  TA  LP+   PQL   + R P  D W +EIKFDGYR+  RI  G+V L TR G DWT
Sbjct: 236 ATSTAADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQMRIADGKVTLKTRKGLDWT 295

Query: 254 ECLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPFL 313
              P    A  A +L D  +DGE+ +L+ +G PDF ALQ A   G++ ++VY+ FD  F 
Sbjct: 296 AKYPEIADA--ASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTGNLVYFAFDLLFD 353

Query: 314 NGEDRRQAPVEERRAALKEALA-GSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRL 372
            GED R   + ER+  L++ LA GS    +RY + F +    +  SAC L+LEG++ K++
Sbjct: 354 GGEDLRSMRLVERKKRLEDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQM 413

Query: 373 GSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAGRVGTG 432
            +PY S R+  W K KCR   E VI GY    G    F +LL+ V+     VY GRVGTG
Sbjct: 414 DAPYQSGRTDTWAKSKCRAGHEVVIGGYATTNGK---FRSLLVGVHRGDHFVYVGRVGTG 470

Query: 433 FDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWV 470
           F  A ++  + +L  LE   SP     +  + + V W+
Sbjct: 471 FGAAKVERFFPKLKALEASKSPFTGIGAPKKEKEVTWL 508