Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 914 a.a., DNA ligase D from Rhodopseudomonas palustris CGA009

 Score =  548 bits (1411), Expect = e-160
 Identities = 337/907 (37%), Positives = 479/907 (52%), Gaps = 123/907 (13%)

Query: 2   SKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSW 61
           S  LS Y +KRDF  TAEP G A     K     FVIQKHDA  LHYD RLE  GV  SW
Sbjct: 3   SNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRR--FVIQKHDATRLHYDLRLEYGGVFKSW 60

Query: 62  AVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRKA 121
           AV KGPSLDP+ KRLAV VEDHPL YG FEG+IP GQYG G V +WDRG W+  D+P + 
Sbjct: 61  AVTKGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWEC-DDPERG 119

Query: 122 YAAGKLKFTLVGEKLSG-----------------DWALVRTR------------------ 146
           +  G LKFTL GEKL G                 +W L++ R                  
Sbjct: 120 FKTGDLKFTLHGEKLHGSWVLVRMRHDRSGGKRTNWLLIKHRDDDAREGDANTVLDEDRS 179

Query: 147 ----------LKGSGDKEQWLLIKEK------------------DPQARSADDYDIVQAQ 178
                      +G G   +  ++++                   D +A +     + +++
Sbjct: 180 VASGRAMDTIAEGKGKAPKPFMLRKAATRVTADAVWDSNTGLAADKRAETGAAKKVAKSK 239

Query: 179 P--NSVLSDASVGKPKTRAK----ARKTALPEQFTPQLATLVDRAPEGD-WQYEIKFDGY 231
           P  ++    A   KP +R+K     ++ A+P+   PQL T V+R P G+ W +EIKFDGY
Sbjct: 240 PTTSAKAKAAKSAKPASRSKPAAQGKRAAMPDFVPPQLCTSVERPPGGEGWGHEIKFDGY 299

Query: 232 RMLARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQAL 291
           RM  R++ GE RL TR G DWT        A +A  L D+ +D EVV+L+  G PDF +L
Sbjct: 300 RMQLRVEHGEARLLTRKGLDWTAKFG--AIADEAASLPDAIIDTEVVALDSHGQPDFASL 357

Query: 292 QNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKEALAGSRST----LLRYSEA 347
           Q A   G + +++ + FD  +++GED R  P+ ER+A L   L  +R      L+RY E 
Sbjct: 358 QAALSDGHTENLICFAFDLLYVDGEDLRGLPLAERKARLAALLKAARGRRKEGLIRYVEH 417

Query: 348 FTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSR 407
           F      I +SAC L+LEG++ K+L + Y S RS  W K KCR   E VI G+    G  
Sbjct: 418 FDTGGDAILQSACKLSLEGIVSKKLDAAYRSGRSDGWTKAKCRAGHEVVIGGWKTTNGK- 476

Query: 408 SGFGALLLAVNNDTGLVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGV 467
             F +LL+ V+    L Y G VGTGF Q  +K I  +L   + +TSP +   +  + R V
Sbjct: 477 --FRSLLVGVHRGDDLAYVGIVGTGFGQDVVKRILPELKAHKADTSPFSGANAPKKTREV 534

Query: 468 HWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQPRTVHSKKP-----VKK 522
           HWV P LVA+++FA +T   +VRQA+F GLR DKP  +V  E+P+ V   +P     + K
Sbjct: 535 HWVTPDLVAEIEFAGFTGAGMVRQASFKGLRADKPAEEVEAEEPQRVELAEPAPMRRIAK 594

Query: 523 TSRD----------------------VNITHPDRVI----DKHSGTQKQQLAQFYDTISQ 556
            S+                       V I+ PD+ +    +  +   K+ LA ++  +  
Sbjct: 595 ASKSGKPAAKRAAPRRADAARSEVMGVAISKPDKELWPASEIGAAITKRDLADYFAEVGD 654

Query: 557 WILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLD--QSLDPGHARLMEIDNV 614
           W++P ++ RP S+LRAP+GI+GE FFQ+H    A+P +  L     +       ++ID V
Sbjct: 655 WLIPHIKGRPCSILRAPDGIDGEHFFQRH----AMPGMSNLIGLAKVSGDRKPYVQIDRV 710

Query: 615 GALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELG 674
             LI A Q+G VE H W    ++ + P   V DLDP P + +  ++ AA+     L+ LG
Sbjct: 711 EGLIAAAQIGGVELHPWNCAPNRYDVPGRLVFDLDPAPEVGFDEVITAAKEMKQRLEALG 770

Query: 675 LQAFVKTSGGKGLHLIVPLARRD--NWETVKAFAKGIAQFMTEQLPERFTATSGPKNRVG 732
           L+ F KT+GGKGLH++VPL   D  +W+  K FA+ +   M E  PE++      + R+G
Sbjct: 771 LKTFCKTTGGKGLHVVVPLKPDDGIDWKAAKTFAQTVCAQMAEDSPEQYLLNMSKRKRIG 830

Query: 733 KIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWTVANVLQRLNALK 792
           KIF+DYLRN R ++ VA  S RAR G  VS+P++  +++     +++T+ +V   +   K
Sbjct: 831 KIFLDYLRNDRMSTAVAVLSPRARTGATVSMPLTWSQVKAGLDPKRYTIESVPALIKRSK 890

Query: 793 ADPWAGY 799
           A  W  Y
Sbjct: 891 A--WTDY 895