Pairwise Alignments

Query, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

Subject, 940 a.a., ATP-dependent DNA ligase from Burkholderia phytofirmans PsJN

 Score =  814 bits (2103), Expect = 0.0
 Identities = 452/938 (48%), Positives = 575/938 (61%), Gaps = 127/938 (13%)

Query: 1   MSKPLSEYNRKRDFGITAEPAGSA----PAGKRKA-----SALSFVIQKHDARNLHYDFR 51
           M+  L  YNRKR F  T EPAG+     PAG++        ALS+VIQ+HDAR LHYDFR
Sbjct: 1   MNDRLDLYNRKRRFDDTPEPAGTRARRKPAGRKTTRQAAGEALSYVIQEHDARRLHYDFR 60

Query: 52  LELDGVLLSWAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGI 111
           LEL+G LLSWAVPKGPSLDPS KRLAVHVEDHP+ YG FEG IP G YGAG VIVWDRG 
Sbjct: 61  LELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGSVIVWDRGT 120

Query: 112 WQPHD---EPRKAYAAGKLKFTLVGEKLSGDWA----------------LVRTRLKGSGD 152
           W+P     E  ++YAAGKLKF L GEKL G W                 L++ R   + D
Sbjct: 121 WEPVGGAAEAARSYAAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDDEARD 180

Query: 153 KEQWLLIKEKDPQARSADDYDIVQAQPNSVLSDASVGKP--------------------- 191
           +  + ++K++ P +  +    + + +  +  +  +  K                      
Sbjct: 181 ESDYDILKKR-PGSVLSGSASVAKGEKTTTAASKTARKTAASDAKSTAKRGGKSSAKAAS 239

Query: 192 KTRAKAR--------------------------KTALPEQFTPQLATLVDRAPEGD-WQY 224
            TRA  R                          K  LP  F PQLATLVD AP GD W Y
Sbjct: 240 STRADPRRPDIVATRNTQSLRELAATPSIEGAVKARLPTTFKPQLATLVDAAPPGDEWSY 299

Query: 225 EIKFDGYRMLARI----QAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWLDGEVVSL 280
           EIKFDGYR+LARI    +   V++FTR G+DWT    +QVKA + L ++ +WLDGE V L
Sbjct: 300 EIKFDGYRVLARIDRDAKGSAVKVFTRAGNDWTAKFSKQVKAFEQLGIESAWLDGEAVVL 359

Query: 281 NGDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKEALAGSRST 340
           + +G+P+FQALQNAFD  R  DI+ YLFD PFLNG D R  P+E+RRA L   +     +
Sbjct: 360 DPNGVPNFQALQNAFDANRPQDIIVYLFDIPFLNGYDLRGVPLEQRRAILHALMEDVDDS 419

Query: 341 LLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGY 400
           +LR+S  F     D+  SACD+ALEG+IGKR  S Y+S RS+ WIKLKCR  QEFVI GY
Sbjct: 420 VLRFSNNFDFSAEDLLRSACDMALEGIIGKRRDSGYLSGRSSTWIKLKCRRRQEFVIGGY 479

Query: 401 TRPQGSRSGFGALLLAVNNDTG-LVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPL 459
           + P GSR+ FGALLL V +  G L YAGRVGTGFD A L+++  +L     +  P A   
Sbjct: 480 SEPSGSRAAFGALLLGVYDSKGNLNYAGRVGTGFDAALLRSVKKELDAHATKRMPFAAVP 539

Query: 460 SSAQARGVHWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQPR------- 512
                  VHWV+P LVA+  FAEWT + +VRQA+FV LR DKP  Q+V E PR       
Sbjct: 540 RERSRTPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRNDKPARQIVKETPRQGADVQQ 599

Query: 513 ---TVHSKKPVKKTSRD---------------------------------VNITHPDRVI 536
              ++    P K+ +R                                  V I+HPDRVI
Sbjct: 600 QTDSISDDAPKKRAARKTSGSNVAAAGKTTAAKPKTAKSPTTAPPAEVAGVRISHPDRVI 659

Query: 537 DKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQ 596
           DK SG +K  L Q+Y+++++W+LP L+ RPVSL+RAPE I GE FFQKHS++L+IPN+ Q
Sbjct: 660 DKSSGARKIDLVQYYESVAEWMLPHLKDRPVSLVRAPEDIGGELFFQKHSQKLSIPNVTQ 719

Query: 597 LDQSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPW 656
               LDPGH  L+ +D + AL+GA QMG+VEFHTW A +  IE PD  V DLDPD AL W
Sbjct: 720 -HPGLDPGHPPLITVDTIKALVGAAQMGTVEFHTWNAVASNIEKPDRAVFDLDPDAALGW 778

Query: 657 KAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWETVKAFAKGIAQFMTEQ 716
           + M+EAAQLT S+L+ELGL +F KTSGGKGLH++VPLA++  W+ VK F++ +AQ M   
Sbjct: 779 ERMIEAAQLTRSLLEELGLTSFCKTSGGKGLHVVVPLAKQAGWDEVKDFSQAVAQHMAAT 838

Query: 717 LPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGA 776
           LP+ F+A  G +NR  KIF+DYLRN RG+STVAA+S RARPGL VSVP++ +E+ G  G 
Sbjct: 839 LPKYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVAGTTGG 898

Query: 777 QQWTVANVLQRLNALKADPWAGYA-NRQKISKKMWDKL 813
            QWT+ N+ +RL  LK+DPWA YA  RQ+I+  M  +L
Sbjct: 899 DQWTIENLHERLAELKSDPWADYAKTRQRITAAMKKRL 936