Pairwise Alignments

Query, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  408 bits (1048), Expect = e-118
 Identities = 222/533 (41%), Positives = 332/533 (62%), Gaps = 7/533 (1%)

Query: 3   SLRNMSISRRLWLILIVAVLMLLALGMLMLKQIHDDLYQAKRQQTQHVVQTASGILTFYH 62
           SLR++SI  RL+L+ +V +++L     +M+K    DL   K+ QTQH+V++A  +L  Y 
Sbjct: 15  SLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYA 74

Query: 63  GLETTGVMTREAAQKQALSAVRGLRYDHDDYFWINDLTPVMIMHPANPKLDGQNLSAIRD 122
              T G +T E AQ  A  A+  LRY  +DYFWIND  P M+MHP  P L+G++L + +D
Sbjct: 75  QQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKD 134

Query: 123 PDGFAVFNEFVILAKAKGAGIVNYRWPKPGAEAPVAKTSYIQLFEPWGWIIGSGVYVDDV 182
           P+G A+F E V + +    G+V Y+WPKPGAE PV K SY++LF+PWGWIIG+G+YVDDV
Sbjct: 135 PNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDV 194

Query: 183 QAEFSSQVWKASFIGLAIALVMALLVSLIARSIVRPLQAAVNAMGNIASGESDLTRSLDT 242
            A    ++       +   LV+ +L SLI RSI +P +  +  + NIA GE DLTR L  
Sbjct: 195 NALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTV 254

Query: 243 HGQDEVTQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELGSNATQAHDRSQQQSQQME 302
            G+DE+ Q+++ FN FT K+R ++ ++     ++  S+ EL   A  A  ++  Q Q ++
Sbjct: 255 TGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVD 314

Query: 303 LVATAINEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQIDQLSGTISQAVE 362
            VA+A+N++    Q+VA++A  A      A   A QG+  I  +  Q+  L   +++  +
Sbjct: 315 TVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQ 374

Query: 363 VIRTLSAESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQR 422
             + L++E+  + +VLEVIR +A+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA R
Sbjct: 375 ETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATR 434

Query: 423 TQKSTAEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASLTAIGESLRNLNGL 482
           TQ ST EI+ +I +LQ  +++  + ++ +   S++T +QA QA   L  I   ++ +   
Sbjct: 435 TQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSF 494

Query: 483 NASIASATLQQAHVVEDINQNVTEAAGLSHSTALAAEQSSVASAHLRGLSEQL 535
           N  IA A+ QQ+   ++I +N+T+ A   HST  +A+ + VA+A     SEQL
Sbjct: 495 NQHIAGASAQQSEATDEITRNLTQIA--EHSTQASAQANQVAAA-----SEQL 540