Pairwise Alignments

Query, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  279 bits (714), Expect = 2e-79
 Identities = 183/568 (32%), Positives = 302/568 (53%), Gaps = 34/568 (5%)

Query: 1   MNSLRNMSISRRLWLILIVAVLMLLALGMLM------------LKQIHDDLYQAKRQQTQ 48
           ++SLR+ +   +L L+ ++ ++++ AL M +            L+    DL  AK+++ Q
Sbjct: 7   LSSLRSRT---KLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQ 63

Query: 49  -HVVQTASGILTFYHGLETTGVMTREAAQKQALSAVRGLRYDHDDYFWINDLTPVMIMHP 107
            +++   + +   Y   E+      +A  KQ L A   +R+D D YF+  D   V  +H 
Sbjct: 64  AYLMMGVTAVKPLY---ESDKAGENQAQAKQILKA---MRFDSDGYFFAYDSQGVNTLHA 117

Query: 108 ANPKLDGQNLSAIRDPDGFAVFNEFVILAKAKGAGIVNYRWPKPGAEAPVAKTSYIQLFE 167
             P+L+G+NL  ++D +G AV    +  +K  G G + + W KP   A   K  Y +   
Sbjct: 118 IKPELEGKNLYGMKDENGVAVIAGLIDASKT-GDGFLYFSWHKPTINAQAPKLGYAEYLP 176

Query: 168 PWGWIIGSGVYVDDVQ---AEFSSQV------WKASFIGLAIA-LVMALL-VSLIARSIV 216
            W W++G+G+Y+DDV    AEF +Q          S IGL++  LV  ++ VS++    +
Sbjct: 177 KWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGI 236

Query: 217 RPLQAAVNAMGNIASGESDLTRSLDTHGQDEVTQLSRHFNSFTAKLRQVVGQLQVCANAL 276
            PLQ  V+++  +A+G  DLT  +    QDE+  +++ FN+F  KL  ++  ++  AN +
Sbjct: 237 APLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTV 296

Query: 277 GQSSQELGSNATQAHDRSQQQSQQMELVATAINEVTYGVQDVAKNAEHAASEMRDAQAQA 336
             ++QEL    +QA  +      + + V  A+ E++   ++VA N    A  +  A +Q 
Sbjct: 297 EAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQI 356

Query: 337 QQGQVNIDSSLQQIDQLSGTISQAVEVIRTLSAESTQIGSVLEVIRSIADQTNLLALNAA 396
              Q  ++ ++  I +L   ++Q    +  LS ++ +I  VL+VI  IA+QTNLLALNAA
Sbjct: 357 AVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAA 416

Query: 397 IEAARAGEQGRGFAVVADEVRLLAQRTQKSTAEIQGMIERLQGHSEAAVKVISDSHSASQ 456
           IEAARAGEQGRGFAVVADEVR LA RTQ ST EI  M+  L      AV+ ++ S    +
Sbjct: 417 IEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGE 476

Query: 457 MTIEQAGQAGASLTAIGESLRNLNGLNASIASATLQQAHVVEDINQNVTEAAGLSHSTAL 516
            T  ++ Q   SL  I +++  ++ +    ASA  QQ+ V EDINQN+     + +  + 
Sbjct: 477 KTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSE 536

Query: 517 AAEQSSVASAHLRGLSEQLDGLLRQFKV 544
           + +Q+   SA L    +Q+  L+  FK+
Sbjct: 537 SFKQTESVSASLSHSGQQMGTLVGHFKL 564