Pairwise Alignments

Query, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  281 bits (719), Expect = 5e-80
 Identities = 170/541 (31%), Positives = 289/541 (53%)

Query: 4   LRNMSISRRLWLILIVAVLMLLALGMLMLKQIHDDLYQAKRQQTQHVVQTASGILTFYHG 63
           LR  +I +RL ++L++A +  +      +K+ + +L + K  Q    + +   ++  Y  
Sbjct: 5   LRQFTILKRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWLQIDGQLGSILSVIDVYRQ 64

Query: 64  LETTGVMTREAAQKQALSAVRGLRYDHDDYFWINDLTPVMIMHPANPKLDGQNLSAIRDP 123
              +G M  + AQK A S +   RY    YF + D    ++ H  +  + G +      P
Sbjct: 65  DAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQNFTLP 124

Query: 124 DGFAVFNEFVILAKAKGAGIVNYRWPKPGAEAPVAKTSYIQLFEPWGWIIGSGVYVDDVQ 183
           +G       +  A+  G   + Y    P ++    K +  + +  WGW + +G Y+ DV+
Sbjct: 125 NGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVK 184

Query: 184 AEFSSQVWKASFIGLAIALVMALLVSLIARSIVRPLQAAVNAMGNIASGESDLTRSLDTH 243
                 +     I   I++ +     ++  SI  PL  A+ A+ +IA GE DL++ L T 
Sbjct: 185 ESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQ 244

Query: 244 GQDEVTQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELGSNATQAHDRSQQQSQQMEL 303
           G+DEV  L+  FN F  K+  +VG LQ    +L   ++ L     +++  ++   ++   
Sbjct: 245 GKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGS 304

Query: 304 VATAINEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQIDQLSGTISQAVEV 363
           VATA+N++     ++A N + AA      ++QAQQ +  ID++++  ++L   +  +  +
Sbjct: 305 VATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAI 364

Query: 364 IRTLSAESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRT 423
            + L   S QIGS+L+VIR+IA+QTNLLALNAAIEAARAG  GRGFAVVADEVR LA RT
Sbjct: 365 TQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRT 424

Query: 424 QKSTAEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASLTAIGESLRNLNGLN 483
           Q ST EIQ +I  +Q    + ++  S +   S+    +A +AG ++ AI E + +++ +N
Sbjct: 425 QDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMN 484

Query: 484 ASIASATLQQAHVVEDINQNVTEAAGLSHSTALAAEQSSVASAHLRGLSEQLDGLLRQFK 543
             +ASAT +Q+ V E+IN+N+   + L+  +  A E +S A+  L+ +S+ +   L QFK
Sbjct: 485 TQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDISQDMSHTLGQFK 544

Query: 544 V 544
           +
Sbjct: 545 I 545