Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  286 bits (731), Expect = 1e-81
 Identities = 163/376 (43%), Positives = 226/376 (60%), Gaps = 30/376 (7%)

Query: 6   QIQVVLIDDDPHLRQALCQTLDLAGLNVLTLGEATGLTARLSRDWPGVVVSDIRMPGMDG 65
           Q +V++++DD  LR+AL  TL LAG   L    A     +L      +VVSD++M GM G
Sbjct: 5   QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64

Query: 66  LELLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALR 125
           L LL  +    P LPVLL+T + ++  AV AM+ GA D++ KPFA + LL+ V R   ++
Sbjct: 65  LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK 124

Query: 126 R------LVLDNRSLRL-ALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGET 178
                  +V D +SL+L AL+D+                       +A T A+V+ILG +
Sbjct: 125 SDDNGDAVVADTKSLKLLALADK-----------------------VAKTDANVMILGPS 161

Query: 179 GAGKEVVARALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEF 238
           G+GKEV++R +H+ S R+ GPF+AIN  A+ ++++E+ LFG+E GAFTGA +   GKFE 
Sbjct: 162 GSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQ 221

Query: 239 ANGGTLFLDEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQ 298
           A GGT+ LDEI  M L++Q KLLR+LQER VERLG  + I LD+R++A +  DL+Q    
Sbjct: 222 AQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQA 281

Query: 299 GRFRADLYYRLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLR 358
           G FR DLYYRLNV PL  P L ER +D   L  H  +    + GLP+  + P     LL 
Sbjct: 282 GHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLN 341

Query: 359 HSWPGNVRELQNAAER 374
           + WPGNVREL N  +R
Sbjct: 342 YPWPGNVRELDNVVQR 357