Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  440 bits (1131), Expect = e-128
 Identities = 235/442 (53%), Positives = 308/442 (69%), Gaps = 6/442 (1%)

Query: 9   VVLIDDDPHLRQALCQTLDLAGLNVLTLGEAT-GLTARLSRDWPGVVVSDIRMPGMDGLE 67
           V LIDD+  +R AL Q+ +LA LN          L A  ++  P V+VSDI +PG+ G  
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63

Query: 68  LLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALRRL 127
           LL+ +  QD ELPV+LITGHGD+ +AV+AM  GAYDF+EKPFA + L+D+V RA+  RRL
Sbjct: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123

Query: 128 VLDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGETGAGKEVVAR 187
            L+NR L+ +L   Q L  R++G +  +  LR+ I  +A T+AD+L+ GETG GKE+VAR
Sbjct: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183

Query: 188 ALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 247
           +LH+ SSRR   FVAIN GA+ E+++ESEL+GHE GAFTGA  RR+GKFE A GGTLFLD
Sbjct: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243

Query: 248 EIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYY 307
           EIESM +  Q++LLR+LQERV+ER+G N+LIPLDIR+IAATK DL+Q+A +G+FR DLYY
Sbjct: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303

Query: 308 RLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRHSWPGNVRE 367
           RLN+  L IPPLRER ED   LF HF   A++R+G     L       LL H WPGNVRE
Sbjct: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363

Query: 368 LQNAAERFALGLELALDNTPDNPSAGTLTSTPGGLSEQVEQFEKSLIAAELTRPHSSMRS 427
           L+NAAER+ L  +LA       P +  L     GL+EQV +FEKSL+   L     S+++
Sbjct: 364 LRNAAERYVLLGKLAQFAESHEPKSKLL-----GLNEQVAEFEKSLLEQTLIECGGSIKA 418

Query: 428 LAEALGVPRKTLHDKLRKHGLN 449
             E L +PRKTL+DK++K+ L+
Sbjct: 419 TMERLHLPRKTLYDKMQKYQLD 440