Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 459 a.a., C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  432 bits (1110), Expect = e-125
 Identities = 238/463 (51%), Positives = 308/463 (66%), Gaps = 9/463 (1%)

Query: 1   MSIDNQIQ---VVLIDDDPHLRQALCQTLDLAGLNVLTLGEATGLTARLSRDWPGVVVSD 57
           MS+ N IQ   V++IDD+PH+   L Q  +L G+      +  G+   L RDW GVV+SD
Sbjct: 1   MSVPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLLDRDWAGVVISD 60

Query: 58  IRMPGMDGLELLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDS 117
           + MP +DG+ L+ ++  QD +LPV+L+TG GD+ +AV A++ GAYDFLEKPF ++ +LD 
Sbjct: 61  VNMPQLDGISLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDV 120

Query: 118 VRRALALRRLVLDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGE 177
           V+RAL  R L L+NR L+  L        R++GHS  + R+R  I  +  T ADVLI GE
Sbjct: 121 VKRALDKRSLTLENRKLKKELESHNVPGPRILGHSVGIQRMRHIIDQVIDTPADVLIEGE 180

Query: 178 TGAGKEVVARALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFE 237
           TG GKE+VAR LHD S+R    FVAIN GA+ E+++ESELFG E GAFTG  K RIGKFE
Sbjct: 181 TGTGKELVARYLHDHSNRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFE 240

Query: 238 FANGGTLFLDEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSAD 297
           +ANGGTLFLDEIES  L +QVKLLR+L++R VERLG N+ I LDIR+IAATK DL+   D
Sbjct: 241 YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCD 300

Query: 298 QGRFRADLYYRLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLL 357
            G+FR DL YRLN+  + IPPLR+R ED  +LF HFA  AS+R+   L  L   Q A+L 
Sbjct: 301 TGQFRQDLLYRLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILT 360

Query: 358 RHSWPGNVRELQNAAERFA-LGLELALDNTPDN-PSAGTLTSTPGGLSEQVEQFEKSLIA 415
            H WPGNVREL+N AER+  LG E A   T  N PS  T  S    L ++VE FE+ LI 
Sbjct: 361 SHDWPGNVRELRNLAERYVLLGGEAAFAGTLGNAPSLHTSMS----LLQRVEFFERVLIE 416

Query: 416 AELTRPHSSMRSLAEALGVPRKTLHDKLRKHGLNFANQSSDDE 458
             L+    S++   E L +PRKTL+DK+RK+ L+     + DE
Sbjct: 417 EALSHNKGSIKLTMEQLELPRKTLYDKMRKYDLDRKQYINADE 459