Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  332 bits (851), Expect = 2e-95
 Identities = 191/470 (40%), Positives = 273/470 (58%), Gaps = 25/470 (5%)

Query: 8   QVVLIDDDPHLRQALCQTLDLAGLNVLTLGEATGLTARLSRDWPGVVVSDIRMPGMDGLE 67
           ++++IDD+  +R +L   L+  G  V    +       L+ D P VV  DI MPGMDGL 
Sbjct: 4   RILIIDDEDDIRFSLRGILEDEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMDGLT 63

Query: 68  LLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALRRL 127
           +L  +H   P LPV++I+GHG +  AV A++ GA+DF+EKP + + ++ +  RAL +R L
Sbjct: 64  VLEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEMREL 123

Query: 128 VLDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGETGAGKEVVAR 187
             +N++LR +L    + +  L+G S  M R+REQI  +A T A VLI GE G GKE+ AR
Sbjct: 124 RRENQALRSSLGAGSK-ADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAAR 182

Query: 188 ALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 247
           A+H  S R + P VA+N  A+ E ++ESELFGHE GAFTGA+  R GKFE A+ GTLFLD
Sbjct: 183 AVHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLD 242

Query: 248 EIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYY 307
           EI  MSL  Q K+LR+LQE+  E++GG + I +D+R++AAT ++L +   QG FR DLYY
Sbjct: 243 EIGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYY 302

Query: 308 RLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRHSWPGNVRE 367
           RL V PL +P LRERG+D L L   F       H           + +LLR+ WPGNVRE
Sbjct: 303 RLRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVRE 362

Query: 368 LQNAAERFAL---GLELALDNTPD------NPSAGTLTSTPGGLSEQV------------ 406
           L+N  ER  +   G  + +++ P       +PS+ + T T    +               
Sbjct: 363 LRNFVERMLILHAGESVDVEDLPPECLRDLSPSSDSATGTAAQSATATCGTGVDGILDFK 422

Query: 407 ---EQFEKSLIAAELTRPHSSMRSLAEALGVPRKTLHDKLRKHGLNFANQ 453
                FE   +A +L     ++  LAE +G+ R  LH KL+ +G+   +Q
Sbjct: 423 AARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLKGYGIIAGDQ 472