Pairwise Alignments

Query, 259 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 256 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  166 bits (420), Expect = 4e-46
 Identities = 94/250 (37%), Positives = 140/250 (56%), Gaps = 2/250 (0%)

Query: 1   MPFELSVDLTTLAILAIVAFIAGFIDAIAGGGGLLTTPALLTAGMPPHLVLGTNKLSSTF 60
           M FEL++ +   A+L  VA +AGFID+IAGGGGLLT PAL+ AG+PP + LGTNKL +  
Sbjct: 1   MEFELTLQVA--ALLFGVAMVAGFIDSIAGGGGLLTIPALMWAGLPPAVALGTNKLQACG 58

Query: 61  GSATASFTFYRRKLFHPRQWVHAIVGTLVGALTGAVVAHYLPAETLNKMLPVIVFACGVY 120
           GS  AS  F R+ L   +    A+    +GA  G V+   +  + L  +LP ++ A G Y
Sbjct: 59  GSFFASLYFVRKGLVDLKTVKLALFCAFIGAALGTVLVQLVDTKILELVLPFLILAIGCY 118

Query: 121 LLFGGTPKAPLDADAPIKKKWQSTQGFSLGFYDGVAGPGTGAFWTVSTMLLHPIDLVKAS 180
            LF                 +  T    +G YDG  GPGTG+F+ ++ + L    L KA+
Sbjct: 119 FLFSKKVSEEDRHQVLTPTVFAFTAALGVGLYDGFFGPGTGSFFALAFVTLAGFGLAKAT 178

Query: 181 GVARSMNFVSNAAALTVFIINGSVDWIVGLAMGISVMCGAFFGARSAISGGAKFIRPVFI 240
             A+ +NF +N A+L  F + G V W++GL M      GA  G+R  ++ G K I+P+ +
Sbjct: 179 AHAKVLNFSTNIASLIFFALGGKVIWLLGLVMLAGQAIGATLGSRLVVTKGTKIIKPLVV 238

Query: 241 TVVLGLTVRL 250
           T+ L ++++L
Sbjct: 239 TMSLAMSLKL 248