Pairwise Alignments

Query, 415 a.a., chloride channel protein from Pseudomonas simiae WCS417

Subject, 574 a.a., chloride channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (266), Expect = 1e-27
 Identities = 101/397 (25%), Positives = 172/397 (43%), Gaps = 18/397 (4%)

Query: 11  LALVVVLTGIGAGLGGMLLALLLHGIQHLAYGYSLDSL--VSDETFLLGVTAAAPERRLL 68
           L L+ +L  I A    +L  LLL    H     +LD    ++D   LL +  A       
Sbjct: 38  LCLLALLFAIFASCVILLFRLLLLWANHYTQIETLDFTGNIADWRALLPLFGA------- 90

Query: 69  VLVVCGLVAGLGWWAIYRYGRPLVSIKQAVAEKMPIMPPKTTLAHAVLQIITVALGSPLG 128
             ++   VA LG     R G  +  +   V      +P ++        +  +     +G
Sbjct: 91  --LLIWFVAKLGSKRYNRMG--IAYVLHRVKLHYGKIPLQSAAGQFFQALFALGTNFSVG 146

Query: 129 REVAPREVGALAATWLSQRARLDPQMHRLLVACGAGAGLAAVYNVPLGGAVFVLEVLVGA 188
           RE     +GA++A+ L+++  L     R++ A G  AG+AA +N PL   +FV+EV+V  
Sbjct: 147 REGPAIHLGAVSASVLAEKFNLPDNSVRIMCASGIAAGIAATFNAPLAAVIFVIEVIVRE 206

Query: 189 FSWPAAVIALATSAIAASVAWIGLGAQLQYEVPNFVLSP-DLIAWAVVCGPVFGVAAYAF 247
           +        + ++   A  + +  G   +++    +  P D      + G V G AA  F
Sbjct: 207 YKVHYFFPIMLSAICGAVSSQLVFGNVHEFDRIQVIHIPLDHYPILAIGGIVLGCAAAFF 266

Query: 248 TQLTGKARAQAARGWRLPVLALINFTIIGGLAMVLPQILGNGKGPAQLGFDNELSIGLAA 307
                K  A   + W L    L+  +I   + ++LPQ LG G            S+ L  
Sbjct: 267 NYALIKVTA-TGQNWPLIYRLLLAGSITTLIGLILPQALGTGDLAISEAISEHPSLLLLI 325

Query: 308 LLLVVKVLITISSLRAGAEGGLLTPGLANGALLAIILGGAWSLAWPGVP--LGAFAIIGA 365
            LLV K++ TI+++  G  GGL+ P    GAL+  IL    ++ +P +   +G + +IG 
Sbjct: 326 ALLVAKIVATIAAIGLGIPGGLIGPLYGIGALIGAILALVSAILFPSIAPYVGLYTVIGM 385

Query: 366 AAFLAASMSMPLTAIVLVAEFTRIDHDFLVPIILAVV 402
            A +   +S PL A+V + E T  D   ++P +   +
Sbjct: 386 TAMMGVCLSAPLAALVALLEMTN-DASIILPAMFVTI 421