Pairwise Alignments

Query, 302 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score =  117 bits (292), Expect = 4e-31
 Identities = 97/291 (33%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 3   DLNLLITLDVLLAEGSVAAAAKRLRLSPSAMSRALARLRETTGDPLLVRAGRGLVATPRA 62
           DLNLL+ LD L+ E  + AAA+R+ LS  AMS A+ARLR   GD L    GR L+ TPRA
Sbjct: 7   DLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGRELIPTPRA 66

Query: 63  LELRDQVSRLVQEANAVLRPVQSLNMNQVTRTFTLRTSEEFVENFGPALLARAARDAPGV 122
             L   V   +      +     LN  Q  R F +  S+  +  F   ++ R AR+APGV
Sbjct: 67  EALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVAREAPGV 126

Query: 123 RLRFIHKADKDSTLLREGSVD--LETGVVDPTAGPEVLTQALFRDRLVGVVRSGHPLSRG 180
               +   D    LLR G VD  +   V   +A P+     LF + LV V    +    G
Sbjct: 127 SFELLPLDDDPHELLRRGDVDFLIFPDVFMSSAHPKA---KLFDEALVCVGCPTNKKLLG 183

Query: 181 DVSVERYAAGQHVYVSRRGQDRGQIDD-LLEAQGLTRQITTIVAGFATAIALARDTDLIA 239
           ++S E Y +  HV      + +  ++  LL   G  R+I  +V GF     L   T+ IA
Sbjct: 184 NISFETYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTLIPRLLSGTNRIA 243

Query: 240 SVPERYTAH--QPEGLHRFALPLTLPTFTVAMLWHPRLDADLAHRWLRGCL 288
           ++P R   +  Q   L     PL    FT A+ W    + D  + WLR  L
Sbjct: 244 TLPLRLVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWLREIL 294