Pairwise Alignments

Query, 302 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score =  112 bits (281), Expect = 8e-30
 Identities = 96/291 (32%), Positives = 129/291 (44%), Gaps = 8/291 (2%)

Query: 3   DLNLLITLDVLLAEGSVAAAAKRLRLSPSAMSRALARLRETTGDPLLVRAGRGLVATPRA 62
           DLNLL+ LD L+ + SV AAA+ + LS  AMS A+ARLR    D L    GR L+ TPRA
Sbjct: 7   DLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPRA 66

Query: 63  LELRDQVSRLVQEANAVLRPVQSLNMNQVTRTFTLRTSEEFVENFGPALLARAARDAPGV 122
             L   +   +      +      N  Q  R F +  S+     F   ++ R AR+APGV
Sbjct: 67  EALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPGV 126

Query: 123 RLRFIHKADKDSTLLREGSVD--LETGVVDPTAGPEVLTQALFRDRLVGVVRSGHPLSRG 180
               +   D    LLR G VD  +   V   +  P+     LF   LV V    +    G
Sbjct: 127 SFELLPPDDNPDELLRRGEVDFLIFPDVFMSSVHPKA---KLFDQTLVSVGCLTNEQLLG 183

Query: 181 DVSVERYAAGQHVYVSRRGQDRGQIDD-LLEAQGLTRQITTIVAGFATAIALARDTDLIA 239
           D+S ERY +  HV        +  ++  LL   G  R+I  +V GF     L   T  IA
Sbjct: 184 DLSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTKRIA 243

Query: 240 SVPERYTAHQPEG--LHRFALPLTLPTFTVAMLWHPRLDADLAHRWLRGCL 288
            +P R   H  +   L     PL L +FT A+ W    + D A  W+R  L
Sbjct: 244 IIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREIL 294