Pairwise Alignments

Query, 404 a.a., MFS transporter from Pseudomonas simiae WCS417

Subject, 470 a.a., putative transport protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  142 bits (359), Expect = 2e-38
 Identities = 110/438 (25%), Positives = 187/438 (42%), Gaps = 65/438 (14%)

Query: 8   SLVSLSLSMLLASLGTSIANVALPSLTRAFDASFHAVQWVVLAYLLAITAVIVSAGRLGD 67
           ++VS+  ++ ++ L  +I N+ LP+L+  F  S     W++  Y LAI   ++S   LG+
Sbjct: 24  AVVSIGFALCMSVLDVNIINIVLPTLSHDFGTSPAVTTWIINGYQLAIVVSLLSFSSLGE 83

Query: 68  RFGRRRSLLAGLLLFAVACGLCGMASSLAWLIAARVLQGLGAAVMMAMALGMVGDTVTKA 127
             G R+  L+G+ LF +   +C ++ S   L  AR+ QG  A+ + ++    +     K+
Sbjct: 84  IIGYRKVFLSGIGLFCITSLICALSDSFWTLTIARIFQGFSASAITSVNTAQLRYVYPKS 143

Query: 128 RTGRVMGLLGTMSAVGTAMGPSVGGVLLSVWGWRAIFLVGVPLGLVAVALACCYLPVDRP 187
           + GR MG+   + A+  A GPSV   +LS+  W  +F + VPLG+ A+ L   +LP  R 
Sbjct: 144 QIGRGMGINAMVVAISAAAGPSVASGILSIASWHWLFAINVPLGITALLLGIKHLP--RQ 201

Query: 188 HARSSAGSGFWPSLKDA----------------SLRTGLVMSALVAAVI----------- 220
             RS     F  ++ +A                     LV+  ++ A++           
Sbjct: 202 EERSKRKFDFVSAIANAVTFGLLIYTLDGFAHHEEMDFLVLQLIILAIVGTFYVRRQLTQ 261

Query: 221 -----------------------------MATFVVGPFYLSRGLGLDPEWMGLVMAVGPC 251
                                        MA  V  PF+L   LG      GL++   P 
Sbjct: 262 TTPLLPLDLLRIPIFRLSILTSICSFIAQMAAMVSLPFFLQNTLGHSEVMTGLLLTPWPL 321

Query: 252 VAAITGVPAGRLTDR-----LGSPRMTLAGLGMMACGALLLSCAWGLFVYLGALVILTTG 306
              +T   AG L +R     LGS  M L  +G+ +   L    +  + + L  L++   G
Sbjct: 322 ATLVTAPLAGYLVERIHPGILGSIGMALFAVGLFSLSGLTAESS-DISIIL-RLMLCGAG 379

Query: 307 YSLFQAANNTAVMGDVEGARRGTVSGLLNLSRNLGLIVGAWALGAVFAWASPDVTRALPQ 366
           + LFQ  NN+ ++      R G  SG+L ++R LG   G   +  +F++   D + A+  
Sbjct: 380 FGLFQTPNNSTIISSAPTKRSGGASGMLGMARLLGQTFGTTLVALLFSFVVHDRSTAVCL 439

Query: 367 SVAYGLHTTFSVALGLIL 384
            V  G     ++   L L
Sbjct: 440 MVGSGFAVVAAIVSSLRL 457