Pairwise Alignments

Query, 515 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 499 a.a., RND efflux system, outer membrane lipoprotein, NodT (NCBI) from Rhodospirillum rubrum S1H

 Score =  191 bits (485), Expect = 5e-53
 Identities = 138/480 (28%), Positives = 233/480 (48%), Gaps = 19/480 (3%)

Query: 41  SKLAPTMGLALLLSACAIGPDYQRPEVVEPAQFKEAQGWRQATPS-DSLARGAWWELYGD 99
           S L   + +  LL  C+  PDYQRP    P  + +   + QA    +++A   W E + D
Sbjct: 15  SSLMSCVAVLALLGGCSFIPDYQRPAAPVPTAWPDGPAYDQAQAGGETIATLGWREFFRD 74

Query: 100 RQLNDLVMRLNTANQTVAQAEARFRQAQALARSSRGAFYPTV----DLSVGKT-RASQGT 154
             L  L+ +    N+ +  A      A+A  R  R    PTV    DL+  +T R +  T
Sbjct: 75  PALQRLIAQALEHNRDLRSAALTVESARATYRIERADLLPTVNGGTDLTHQRTPRTATQT 134

Query: 155 GSSNASLSSSSSGIRDTLNAQLGV-SWEADIWGKLRRGLEANEASAEASSADLAAMRLSQ 213
           G +  + + S         A +G  S+E D +G++R   E       A+     +++++ 
Sbjct: 135 GKAQTTTNYS---------ANIGTTSYEIDFFGRIRSLEEEALEQYFATEEARRSVQIAL 185

Query: 214 QSELVQSYLQLRVMDEQTRLLQATLETYQRSLQMTENQYRAGVSGKDAVAQAQTQLKTTQ 273
            +E+  +Y+ L       +L + TL T   S  +T+  +  GV  +  V QAQT ++T +
Sbjct: 186 IAEVANAYITLLADRTLLQLTEETLNTRIESFNLTQQSFDRGVGTRLDVTQAQTTVETAR 245

Query: 274 ASLIDLIWQRAQLENAIAVLIGEAPANFNLAVSKDIPA---LPQIPVSLPSQLLERRPDI 330
           A+        AQ  NA+ +L+G+      LA +  +      P +P  LPS LL RRPDI
Sbjct: 246 ANRAIYTRYVAQDINALRLLVGDQLDANLLAGTPPLDLGRFFPNVPAGLPSDLLLRRPDI 305

Query: 331 ASAERSVIAANANIGVAKAAYYPDLSLSLAGGYSSSTYADWISLPNRFWSVGPKLAMTLF 390
             AE  ++AANANIG A+AA++P +SL+   G +S++  D  S  +  WSVGP L++ LF
Sbjct: 306 LEAEHKLVAANANIGAARAAFWPKISLTGNLGTASASLGDLFSSGSLAWSVGPSLSVPLF 365

Query: 391 DGGQRSAEVDRTVASYDETVAKYRQTVLDGFREVENYMVQLKVLEDEAVVSNEALEAARE 450
           D  +  A ++      +  VA Y +++   FREV + +     L D+     + + A +E
Sbjct: 366 DFWRNEATLESAKVQREIAVAAYEKSIQTAFREVADALAAKGTLGDQLRAQQDLVAATQE 425

Query: 451 SLRLTQNQYKAGLIAYLDVVTVQATALSNERTVLTLLQTRLVASVQLIAALGGGWDGQTP 510
           S  L++N+Y  G+  YL  +  Q +  + ++ ++++   +L   + L   LGGG    +P
Sbjct: 426 SYALSRNRYDQGIDNYLSTLDSQRSLYAAQQDLISVRANQLTNYITLYKVLGGGSFATSP 485