Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 59.3 bits (142), Expect = 4e-14
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 7   CLQACARGDQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSFDPSR 66
           C++     D +A   ++   S  L    M+   +  +A ++V +    +W+ A  FD  +
Sbjct: 17  CMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQK 76

Query: 67  GSARGWVFSVTRHLALNFVRNQYRE--VPLSDE--HEQVAATDTFEFTA-----RSGQVH 117
            S   W++++ R+L+ + +R Q       L+D+   E     D  +  A        QV 
Sbjct: 77  SSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVM 136

Query: 118 TCLEQLDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALRECM 170
             L++L   ++  I   Y++     ++A  LD PLGTVK+ ++ ++  LR  M
Sbjct: 137 KFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSM 189