Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 202 a.a., Sigma-70 region 2:Sigma-70 region 4 from Pseudomonas syringae pv. syringae B728a

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 15  DQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSFDPSRGSARGWVF 74
           D+ +  ++Y+  +  LL     +      AE++V +  +K+W  A SFDP++ S   W+F
Sbjct: 38  DRDSFMRIYDHFAPRLLRYLTGLNVPEGQAEELVQEVLLKLWHKADSFDPAKASLGTWLF 97

Query: 75  SVTRHLALNFVRNQYREVPLSDEHEQVAATD-----TFEFTAR-SGQVHTCLEQLDPVRR 128
            + R+L ++ VR     V + +  EQ+   +     T +++ R   Q++  ++ L   + 
Sbjct: 98  RIARNLYIDSVRKDRGWVQVQNSLEQLERLEAPVDRTLDYSQRQEQQLNIAIQNLPADQA 157

Query: 129 TCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALR 167
             +  +Y +  SH EI+++L  PLGTVK+ ++ +   LR
Sbjct: 158 RVLRMSYFEALSHREISERLGMPLGTVKSCLRLAFQKLR 196