Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 184 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 56.6 bits (135), Expect = 2e-13
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 19/172 (11%)

Query: 9   QACARGDQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSFDPSRGS 68
           Q  A+GD+ A   LY++    +  +A+R+    SLA++I+ ++F+++W     F   RG 
Sbjct: 23  QQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLPQF---RGE 79

Query: 69  AR--GWVFSVTRHLALNFVRNQ----YREVP---LSDEHEQVAATDTFEFTARSGQVHTC 119
           ++   W +S+  + AL+ ++       R VP   + D  E     D          +   
Sbjct: 80  SQFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPEHSQNDDGL-------LLDRL 132

Query: 120 LEQLDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALRECMA 171
           + +L    R   +   V+G+SH E+A  L    GT KA   R+   ++E ++
Sbjct: 133 IVRLPERARLVFVLFAVEGFSHEEVASLLGISTGTSKAHYHRARELMKEMLS 184