Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 208 a.a., RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 58.5 bits (140), Expect = 7e-14
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 5   EACLQACARGDQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSFDP 64
           E  + A A   Q+A R L  +     + +A RI R+ + A+DI  +AF+++W  A SFDP
Sbjct: 30  EVLMLAVAERRQQAFRVLMARHMPRAIRLAQRIVRDPAEADDIGQEAFLRVWNKASSFDP 89

Query: 65  SRGSARGWVFSVTRHLALNFVRNQYREVPLSDEHE----QVAATDTFEFTARSGQVHTCL 120
                  W++ +  +L+ +  R   R  P+ D  E      A  +      +   +   L
Sbjct: 90  KIARFSTWLYRIVLNLSFDRTRKP-RHAPIEDAAEVPSADPAPVEALITAQQQRLLEAAL 148

Query: 121 EQLDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALRECM 170
            +L   +R  I   +++G S  E A+ ++      ++ + R+   L++ +
Sbjct: 149 AELPERQRGAIALFHMEGLSGEEAARAMNLSPKAFESLLGRARLTLKKAV 198