Pairwise Alignments

Query, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 547 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  252 bits (644), Expect = 2e-71
 Identities = 173/524 (33%), Positives = 274/524 (52%), Gaps = 19/524 (3%)

Query: 18  FIALLVILLGV-FAVNRMAQIRQSSVEMTATQLPSVTSLGVITENVLRLRILSFRVLVNR 76
           F  LL++++G+ F+ + +          T   +    +L  + +N   +RI +   L   
Sbjct: 19  FFTLLLLIIGITFSTSSLKTAFHQVTVSTEQLITDKDNLTTLIDNTYAMRISAIYSLFR- 77

Query: 77  EPASLQEAETRIGVLVDKVKTAQASYAALPAGPE----EAALYKTFMVTLDNYLKAQADM 132
            PA   E      VL +K     A   +L   PE     A L +     +D  ++    +
Sbjct: 78  -PA---EVTALPNVLKEKQTENLALLRSLADNPELKNEVAGLTQAMQRYVDYSIQTMIPL 133

Query: 133 LALSKQGKVDEMRALINSRIKDGTDQMGEQLNKLI-AINVAD------AKTADTDAGQSY 185
           L +    +  + R    ++ +  T +  +  N++I AI+V        A T   ++   +
Sbjct: 134 LNIEHSDQEKDER--FTAQYEQATAEYRKVGNEMIKAIDVLSNRLNQVAMTTIDESEHEH 191

Query: 186 DGAITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVEVAETIAGGNLSKAIEDDGKDEP 245
           D  ++      +   L+  L +WLL   IVTP+R+  +    IA GNL    +++G +E 
Sbjct: 192 DSVMSQSTFALIGILLVAALSSWLLAGIIVTPIRQLQQTVREIAKGNLLVKAQEEGNNEI 251

Query: 246 ARLLGALATMQANLRQTIQHIAGSATQLASAAEELSAVTEEASKGLQQQNNEIDQAATAV 305
             L   +      LRQT++ +   +T +ASA+ EL+ V  +AS    Q+  E++Q A+AV
Sbjct: 252 TLLARDVNATVTQLRQTVESLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAV 311

Query: 306 NEMTAAVEEVARNAVSTSEASSQSNQAAREGRDRVVETVGAIQTMTQDVQNTAAMIEGLA 365
           N++ +  + V  +A S   A+ Q+NQ A +      E+  A   M   ++  A ++  L 
Sbjct: 312 NQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLK 371

Query: 366 TQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQ 425
            Q   IG V +VIR+I+EQTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RT  STQ
Sbjct: 372 EQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQ 431

Query: 426 EIEKMVAGIQNGTGEAVQSMQQSNQRTQTTLEMARAAGVALEQITQSISLINERNLVIAS 485
           EI+ ++  +QN +  A  SM  S    +    +A     +L +I  SIS + + N  +A+
Sbjct: 432 EIQAIIEELQNQSNTANSSMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVAT 491

Query: 486 ASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRLA 529
           ASEEQ+QV+++++RNL NI +L +Q+  G  Q++AASHELS LA
Sbjct: 492 ASEEQSQVTKDINRNLSNIYELVSQNVTGITQSAAASHELSDLA 535



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 425 QEIEKMVAGIQNGTGEAVQSMQQSNQRTQTTLEMARAAGVALEQITQSISLINERNLVIA 484
           +++++ V  I  G    V++ ++ N   + TL +AR     + Q+ Q++  +   +  +A
Sbjct: 225 RQLQQTVREIAKGN-LLVKAQEEGNN--EITL-LARDVNATVTQLRQTVESLVRISTDVA 280

Query: 485 SASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRLAVDLNG 534
           SAS E A V  +   N    +    Q A+  NQ  + +  ++  A   +G
Sbjct: 281 SASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADG 330