Pairwise Alignments

Query, 297 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 308 a.a., NodD1 nod-box dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score = 99.0 bits (245), Expect = 1e-25
 Identities = 82/296 (27%), Positives = 132/296 (44%), Gaps = 15/296 (5%)

Query: 9   VDLNLLKTFEALHDESSASRAALRLGVTQSAVSAGLRRLREVYGDQLFVRTGRGLAPTLR 68
           +DLNLL   +AL  E   + AA R+ ++Q A+SA + RLR  +GD+LF   GR L PT R
Sbjct: 6   LDLNLLVALDALMTERKLTAAARRINLSQPAMSAAIARLRTYFGDELFSMQGRELIPTPR 65

Query: 69  ANQLKPVISEALERCRQSLAMVDPDNQHYQGRSVVLGLSDDFEIAYGRRLIEAIAQRAP- 127
           A  L P + +AL   + S+   DP N     R   + LSD   + +  R++E +A+ AP 
Sbjct: 66  AEALAPAVRDALLHIQLSVIAWDPLNPAQSDRRFRIILSDFMILVFFARIVERVAREAPG 125

Query: 128 ---RLRVIFRQTHSQIVAGALLDRTLDLAITAGGFAQGRLSRQVLGEGDYRCLVDSDQ-- 182
               L  +    H  +  G      +D  I    F      +  L +    C+       
Sbjct: 126 VSFELLPLDDDPHELLRRG-----DVDFLIFPDVFMSSAHPKAKLFDEALVCVGCPTNKK 180

Query: 183 --ASISLEEFVTREHVLVSSGGFIGITDEGLAAL--GLSRQVCASTSHFAALPFLLKGSQ 238
              +IS E +++  HV    G  +  + E    L  G +R++      F  +P LL G+ 
Sbjct: 181 LLGNISFETYMSMGHVAAQFGREMKPSVEQWLLLEHGFNRRIELVVPGFTLIPRLLSGTN 240

Query: 239 AVATIPGHAAQAIAQMTGLRVLPCPLALPRYPVELGWRTQAQLDPLLLKVREAIVE 294
            +AT+P    +   Q   LR++  PL    +   + W      DP  + +RE +++
Sbjct: 241 RIATLPLRLVKYFEQTIPLRIVTSPLPPLFFTEAIQWPALHNTDPGNIWLREILLQ 296