Pairwise Alignments

Query, 331 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 324 a.a., Transmembrane sensor from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (278), Expect = 2e-29
 Identities = 88/302 (29%), Positives = 142/302 (47%), Gaps = 14/302 (4%)

Query: 13  AITDAAAHWCMRLHAVDCTASERQAFEQWHDAHPLHAFEYAAMLEIWDVADHLPRNEPTA 72
           ++ DAA  W + L +   +A ER+AF QWH A   HA  +   L + D    +      A
Sbjct: 12  SVLDAAIAWQLSLDS--SSAQEREAFAQWHAADEEHARAWR-QLGMLDQRFSVANGPARA 68

Query: 73  TVVPFKP--RRRLRTYAVAAAICLVALPLAAFTGWEAGWLPSSYERFD---ATHGLRQVT 127
            ++  +   RRR+R      A  + A+ LA F G    +LP  Y   D   AT   R + 
Sbjct: 69  ALLQSRVSIRRRIRKVGSGLASVIAAIGLALFAGDR--YLPLDYWLADQRTATGEQRTLR 126

Query: 128 LGDGSQVELNLGTQLVYSNYKDQRRVTLKKGEAFFKVSHDTAHPFIVHAGEGQVRVTGTQ 187
           L DG+ + LN  + L       QRR+ L++GE   +  HD   PFIV   EG++R  GT+
Sbjct: 127 LDDGTLINLNTHSALDVRFDDKQRRIVLQEGEILVETGHDDPRPFIVETREGRLRALGTR 186

Query: 188 FNVWKYEDQVRVTLLEGSVQISSDKVHGSVPLTPGMQANYQHGDATPRVRTMSPNDTALA 247
           F V + ++  R+++L+ +V            L  G Q   +     P   T++ N  A A
Sbjct: 187 FLVKREDEGTRLSVLKSAVAAHPQATDQEQILREGQQVLMRRDGLGP---TLALNPGADA 243

Query: 248 WRQGKLILDNLALADALPLINRYLSKPVMLADANTGTIRIGGIYNINEVNNLVPSLPKVL 307
           W +G L++DN  L D +  + RY  +  +  +     +RI G + +++ +  + +L   L
Sbjct: 244 WTRGMLVVDNARLEDLVHELGRY-RRGYLGVEPQVADLRITGSFPLHDTDLALTALLPTL 302

Query: 308 PV 309
           PV
Sbjct: 303 PV 304