Pairwise Alignments

Query, 645 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas simiae WCS417

Subject, 607 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella amazonensis SB2B

 Score =  282 bits (721), Expect = 4e-80
 Identities = 148/344 (43%), Positives = 221/344 (64%), Gaps = 5/344 (1%)

Query: 5   LQQVFGFPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
           LQQVFG+  FR GQ E ++ V  G     I PTG GKSLCYQ+ A++LP +TLVVSPL++
Sbjct: 17  LQQVFGYRDFRPGQREVMTRVCQGEDCLVIMPTGGGKSLCYQVPALVLPGVTLVVSPLIS 76

Query: 65  LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRNFLQ 124
           LM+DQ+  L + G++A  ++S+Q R++A +V+ + R GELK+L +S ERL    F + L 
Sbjct: 77  LMKDQVDSLIQSGVAAAYLNSSQPREQAIEVLRQLRFGELKLLYVSPERLLQGDFLSRLD 136

Query: 125 SVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADMQAKF 184
            + ISL  VDEAHCISEWGH+FRP+Y  L   +++F     + LTATA     + +  + 
Sbjct: 137 ELHISLFAVDEAHCISEWGHDFRPEYAALGQLKQRFPHVPVMALTATADEATRSSICERL 196

Query: 185 AIAPGDVVTTGFYRPNLNLLV-EPVSGADKRRRLVQWMSERAGQPSIVYVTLQKTAEQIA 243
            I P   + + F RPN+   V E ++ A++ R+ +Q    + G   IVY + ++  +++A
Sbjct: 197 GIQPFQHLAS-FDRPNIRYTVAEKLNAANQLRQFIQ---SQKGANGIVYCSSRRRVDEVA 252

Query: 244 EHLNRNGIQAEAYHAGLPHDKREGIQQRFMSGRSHCIVATIAFGMGIDKSDIRNVVHFDL 303
           E L + G  AE YHAG+  D+R  +Q RF+  +   +VAT+AFGMGI+KS++R VVH+D+
Sbjct: 253 ERLRQQGFYAEGYHAGMTQDERASVQDRFLKDQIDVVVATVAFGMGINKSNVRFVVHYDI 312

Query: 304 PKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTP 347
           PKSIE+Y QE GRAGRDG  ++ L+L +   +  + + +    P
Sbjct: 313 PKSIESYYQETGRAGRDGLDAEALLLFDPADIGRVRHLIEQQEP 356



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 515 EVARIHAMLDLFATERCLGQRLAQYFGDENAPQRCGHCSVC 555
           E  ++++M      + C  Q L  YFG E A + CG+C +C
Sbjct: 363 EFHKLYSMAAFAEAQTCRRQVLLHYFG-EAANEPCGNCDIC 402