Pairwise Alignments

Query, 645 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas simiae WCS417

Subject, 610 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella loihica PV-4

 Score =  281 bits (719), Expect = 6e-80
 Identities = 146/344 (42%), Positives = 222/344 (64%), Gaps = 5/344 (1%)

Query: 5   LQQVFGFPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
           LQ VFG+  FR GQ E +  V  G+ A  I PTG GKSLCYQL A++L  LTLVVSPL++
Sbjct: 20  LQTVFGYRTFRTGQREVIEQVCGGQDALVIMPTGGGKSLCYQLPALVLHGLTLVVSPLIS 79

Query: 65  LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRNFLQ 124
           LM+DQ+  L++ G++A  ++S+QSR+EA  +  +  +GELK+L +S ERL  + F   L 
Sbjct: 80  LMKDQVDSLKQMGVAAAYLNSSQSREEALTIYRQLHNGELKLLYVSPERLLTDSFIERLH 139

Query: 125 SVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADMQAKF 184
           ++ +SL  +DEAHCIS+WGH+FRP+Y  L   ++ F     + LTATA      D+  + 
Sbjct: 140 NLPLSLFAIDEAHCISQWGHDFRPEYAALGQLKQLFPRVPMMALTATADKATREDICQRL 199

Query: 185 AIAPGDVVTTGFYRPNLNLLV-EPVSGADKRRRLVQWMSERAGQPSIVYVTLQKTAEQIA 243
            IAP +++T+ F RPN+   V E ++ A++ R+ +Q    + G   I+Y + ++  +++A
Sbjct: 200 GIAPFELLTS-FDRPNIRYTVAEKLNAANQLRQFIQ---AQNGNSGIIYCSSRRRVDEVA 255

Query: 244 EHLNRNGIQAEAYHAGLPHDKREGIQQRFMSGRSHCIVATIAFGMGIDKSDIRNVVHFDL 303
           E L   G  A+AYHAG   ++R  IQ+RF+  +   +VAT+AFGMGI+KS++R VVH+D+
Sbjct: 256 ERLRMQGYHADAYHAGKTQEERADIQERFLKDQLDIVVATVAFGMGINKSNVRFVVHYDI 315

Query: 304 PKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTP 347
           PKS+E Y QE GRAGRDG  ++  +L +   +  + + +    P
Sbjct: 316 PKSVEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQQEP 359



 Score = 32.0 bits (71), Expect = 8e-05
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 470 YFQEQGLIELESKQMTEVYSLLDADFDADV-----LSKQLYTGFKQHEVGEVARIHAMLD 524
           Y+QE G    +     E + L D    AD+     L +Q   G +Q    E  +++ M  
Sbjct: 322 YYQETGRAGRDGLD-AEAFMLFDP---ADIGRVRHLIEQQEPGPQQQV--EYHKLNTMAA 375

Query: 525 LFATERCLGQRLAQYFGDENAPQRCGHCSVC 555
               + C  Q L  YF DE+A + CG+C +C
Sbjct: 376 FAEAQTCRRQVLLHYF-DESASEPCGNCDIC 405