Pairwise Alignments

Query, 645 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas simiae WCS417

Subject, 658 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella sp. ANA-3

 Score =  625 bits (1611), Expect = 0.0
 Identities = 344/637 (54%), Positives = 428/637 (67%), Gaps = 13/637 (2%)

Query: 5   LQQVFGFPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
           LQQ FGF  FR GQ E VS +L+G S+ AIFPTGSGKSLCYQ +A+ LPHLTLVVSPLLA
Sbjct: 18  LQQQFGFDGFRQGQHEVVSQLLSGHSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLLA 77

Query: 65  LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRNFLQ 124
           L++DQL FL   GI A SIDS  + +    VM  AR GELK+LM+SVER KNERFR F+Q
Sbjct: 78  LIKDQLSFLHEKGIKAASIDSTLTPELTQQVMRDARYGELKLLMVSVERFKNERFRQFIQ 137

Query: 125 SVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADMQAKF 184
           S+ IS+LVVDEAHCISEWGHNFRPDYLKLPDY+R+  IP  LLLTATAT KV  DM A+F
Sbjct: 138 SIPISMLVVDEAHCISEWGHNFRPDYLKLPDYRRELAIPLVLLLTATATRKVKLDMAARF 197

Query: 185 AIAPGDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSERAGQPSIVYVTLQKTAEQIAE 244
            I P  +V TGFYR NL+L V PV+   K   L Q ++   G   IVYVTLQ TAE +A 
Sbjct: 198 DIKPQHIVQTGFYRSNLDLTVLPVASQHKLTALQQQLNLFTGT-GIVYVTLQHTAEDVAA 256

Query: 245 HLNRNGIQAEAYHAGLPHDKREGIQQRFMSGRSHCIVATIAFGMGIDKSDIRNVVHFDLP 304
            L + G  A AYHAG   +KR+ IQQ FM G+   +VATIAFGMGIDKS+IR VVH+DLP
Sbjct: 257 KLCQMGFDASAYHAGFEDEKRQQIQQDFMQGKIRIVVATIAFGMGIDKSNIRFVVHYDLP 316

Query: 305 KSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRRVLEELQAARA 364
           KSIENY QEIGRAGRDG  S C+ LAN D +N +ENFVYGDTPE   I  V++ ++    
Sbjct: 317 KSIENYCQEIGRAGRDGLLSHCVTLANLDGINTVENFVYGDTPELASIAAVIDNIREETH 376

Query: 365 DGQWEFLLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLVEPEA-LLAR 423
           +G+WE  L  LS+ SNIR+LPLKTLLVQLE+ GVI P YA+YA+  +++ +EP+A +L++
Sbjct: 377 NGRWELQLHQLSNVSNIRQLPLKTLLVQLEMMGVIKPLYAYYADISYRF-IEPQAQILSQ 435

Query: 424 FSGERQQFVAAIIDVCKRAKIWATVDFDALYQQHNAERGRVVKALDYFQEQGLIELESKQ 483
           FS ERQ F+  I    +  ++W ++DF ALYQ   AER RV+ AL+Y   Q LIELE+K+
Sbjct: 436 FSPERQAFLNDIFTHTQMKRVWGSLDFSALYQATGAERTRVLAALEYLASQQLIELEAKR 495

Query: 484 MTEVYSLLDADFDADVLSKQLYTGFKQHEVGEVARIHAMLDLFATERCLGQRLAQYFGDE 543
           +T+VY +         L+ +L+  F   E  EVARI  ++  F    CL   LA+YF D 
Sbjct: 496 VTDVYQVNAEVLAQGHLADELHQYFTDKEAKEVARIAQLVRFFELTTCLNYNLARYFDDN 555

Query: 544 NAPQRCGHCSVCHGHVAHLAPPPGLPALVDKNFMGLCGDFIHRHHEHTGHLPGAERLT-- 601
            APQ CGHCSVC G +A LA    +P   D     L  D      + T    G   L+  
Sbjct: 556 AAPQSCGHCSVCRGQLAKLAYSE-VPKWPDD--AQLKADL--HELKRTAGSKGLASLSLD 610

Query: 602 ---RFLGGISVPLFTKLKARGIPGFAALEDYPYAEVR 635
              RF+ G+++PLFT+L+ R + GF   E   YAE++
Sbjct: 611 TQCRFMAGMTLPLFTRLQVRKLSGFGRCEHLRYAEIK 647