Pairwise Alignments

Query, 272 a.a., shikimate dehydrogenase from Pseudomonas simiae WCS417

Subject, 278 a.a., shikimate dehydrogenase from Methanococcus maripaludis S2

 Score =  110 bits (276), Expect = 3e-29
 Identities = 87/271 (32%), Positives = 135/271 (49%), Gaps = 32/271 (11%)

Query: 6   VFGNPIGHSKSPLIH-----------RMFAEQTGEQLDYSTLLAPLEDFSGCAREFFQQG 54
           + G+P+ HS SP++H           R FA    E+         L+D    A+ F    
Sbjct: 11  LIGHPVDHSFSPIMHNAAIKDLKINYRYFAFDVSEE--------NLKDVVAGAKAF--NF 60

Query: 55  RGANVTVPFKEDAYRLANSLTERAQRAGAVNTLSKLADGSLLGDNTDGAGLVRDLTVNAG 114
           RG N+T+P K +  +  + +   A+  GAVNT+ K+ +G  +G NTDG G+ + L    G
Sbjct: 61  RGFNITIPHKMNIMKYLDEIDCDAEAIGAVNTV-KIENGKAIGYNTDGIGVKKALEEKTG 119

Query: 115 LNLQGKRILLLGAGGAVRGALEPLLAEQPASLIIANRTVEKAEMLA-ELFDDL---GPVS 170
           + L  K IL++G+GGA R     L  +   +L I NR +EKAE L+ E+   L    P++
Sbjct: 120 I-LINKNILIIGSGGASRAVSFELAKDN--NLTIVNRNIEKAENLSKEISRKLKKENPLN 176

Query: 171 ASGFDWLREPVDVIINATSASL--SGDVPPIASSLIEPGKTFCYDMMYAKEPTAFCRWAT 228
             G D   E  D+IIN T   +    +V P+             D++Y      F + A 
Sbjct: 177 YGGLDINIENFDIIINTTPVGMYPHTEVEPVIPLNNIKKDAVVMDLIYNPLEPVFLKEAK 236

Query: 229 EHGASVAMDGLGMLVEQAAEAFYLWRGVRPD 259
           ++GA   ++G+GMLV Q A +F +W G++PD
Sbjct: 237 KYGAKT-INGIGMLVYQGAVSFEIWTGIKPD 266