Pairwise Alignments

Query, 609 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 75.1 bits (183), Expect = 7e-18
 Identities = 113/516 (21%), Positives = 208/516 (40%), Gaps = 67/516 (12%)

Query: 76  PVSTPNFLQYGVNELN-------EPLMVGTGLYAPSGDEPTSSYGLIAQSVEYSEDRSWV 128
           P    NF  Y    L        EPL+V   +    G+ P      +A+S + ++D   V
Sbjct: 39  PTMVRNFNPYLATNLRTTTDFIYEPLVVFNEM---KGNTPVFR---LAESYKMADDLMSV 92

Query: 129 VFNLRPEARFHDGKPITAYDVAFSYRTLLTEGHPQYRTNLQEVARVDILNRHRIRFVFKR 188
            F++R   ++ DG+  TA DV +S+  L  +     R   + V  V+ ++ +++RF    
Sbjct: 93  TFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSE 152

Query: 189 AGNPLLILRLGELPVLPQHYWKN-RDFKATTFEPPLGSGPYRISKVTPGRQLVFERVKNY 247
           A N  +   +  +P++ +H WK+ +D    T E P+G+GP+ +      +  +  R  NY
Sbjct: 153 A-NSNVPYEISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNY 211

Query: 248 WGKDLPVNRGFYNYDKVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYNFPAVNRG 307
           W           +   +EV+  R   +A      G+    I +   +W + +  P ++R 
Sbjct: 212 W-----------DAANLEVDCLRVPQIANNDQLLGK----IVNSELDWTSSF-VPDIDRT 255

Query: 308 DVIKAQIAH--QIPTQSQGLFMNSRRPIFSQAKVREALGLMFDFEWTNRTLFSSAYKR-- 363
                   H       +Q   +N + P    AK +EAL  + DF    R  FS A  R  
Sbjct: 256 YAAANPNHHYWYPAAGTQAFMVNFKNP--DPAK-KEALDNV-DF----RRAFSMALDRQT 307

Query: 364 --TLSYYPNSEFSATGVPTGHEWLMLSPYRDQLPASLFTQPFSLPQTDGRGIPRETMRRA 421
              +++Y +   +      G+ +     + D+     +           +G     +  +
Sbjct: 308 IIDIAFYGSGTVNDFASGLGYAF---EAWSDEATHKKY-----------KGFNTYDVEGS 353

Query: 422 LALLGDAGWK-LSGQRLLNKDGQPLRFEILLVNPN----LERILQPYVENLISIGIDARL 476
             LL  AG+K ++G   +        FE+L+ +PN        +Q  VE L  +GI A+ 
Sbjct: 354 KKLLAKAGFKDVNGDGFVETPSGK-SFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKA 412

Query: 477 RTVDRAQYKQRLDQFDFDMILITLNQTLSPGLEQWQYFHSSQAAIKGSKNYA--GIANPI 534
           RT + A Y Q + +  +D+          P       ++S+  +  G   +A     +  
Sbjct: 413 RTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKK 472

Query: 535 VDHLLEQLLAAKTREEQLAAGRALDRVLLWQHYSIP 570
           +D LL+       + EQLA    + +++     +IP
Sbjct: 473 LDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIP 508