Pairwise Alignments

Query, 610 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  489 bits (1258), Expect = e-142
 Identities = 250/557 (44%), Positives = 336/557 (60%), Gaps = 4/557 (0%)

Query: 34  KYPADFKHFDYVNPDAPKGGTFRESAMGGFDSLNPYISKGVPADNLGLIYDTLAMQSLDE 93
           KYP +F HFDYVNP APK G      +G +D+ N + S+GV A N   +YD L     DE
Sbjct: 43  KYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSPADE 102

Query: 94  PITEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPIRAEDVVFTFQELIKEGSPIYRTY 153
             + Y L+A KI  + D +W+   L P ARFHDG PI A+DV F+F++ + EG P YR Y
Sbjct: 103 IDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVY 162

Query: 154 YADVDEVVAEDPLKVLFKFKRTNNRELPLILGQLPVLPKHWWATRDFAKGNLEVPLGSGP 213
           Y DV  V A     V  + K+ N  +L  +     VLPKH+W  ++ A+   E P+GSG 
Sbjct: 163 YQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGA 222

Query: 214 YKVAEVKAGRMIRYERVKDYWAKDLPITQGFYNFDNRITDYYRDSTVSLEALKAGQFDYW 273
           Y++ + K G+ + Y+   DYWAKDLP+  G  NF     DYYRD TV LEA KAG+FD  
Sbjct: 223 YQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLR 282

Query: 274 LEFSAKNWANAYNIPAVAQGRLIKEEIPNGNPTGMQGFVFNMRKPMFQDVRVRKAISLLL 333
            E  AK WA +Y      QG + KEEI +  P   QGF+FN ++P+FQDVRVR+A++  L
Sbjct: 283 EENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYAL 342

Query: 334 DFEWSNKQLFNGAYTRTRSYFENSEMAATGLPGPDELAILEPLRGKIPPEVFTQAFEPSK 393
           DFEW NK LF   Y RTRSYF+N+E  A GLP   ELA+L P + ++P  VFT+ ++PS 
Sbjct: 343 DFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSV 402

Query: 394 TDGSGMIRTQQREAYQLLQEAGWRIVDDKMVDT-SGKPVTIEFLLAQTEFERILLPFKRN 452
           TDGSG IRTQ REA+ LL+EAGW + +  M +  +G+P++ E L+     ERI +P ++N
Sbjct: 403 TDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKN 462

Query: 453 LADLGIDLVIRRVDVSQFINRIRSRDFDMLVGSFPQSTSPGNEQREFWKSSSADKPGSRN 512
           L  +GI++ IR VD +Q+  R+R RDFDM+   F  +  P       W S+  D   S N
Sbjct: 463 LQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMD--SSYN 520

Query: 513 YMGLKDPAIDQLVEELIDA-DSRKSLVAHAKALDRVLQFGYYVIPNWHIKTFRVAYWDHL 571
             G   P ID L E++  +    + L A   ALDRVLQ+ +Y+IP WH+  +RVA WD  
Sbjct: 521 SAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKF 580

Query: 572 GHPKVPPRYDVGTATWW 588
             P V P+Y +G  TWW
Sbjct: 581 SRPSVLPKYSLGLDTWW 597