Pairwise Alignments

Query, 339 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  129 bits (324), Expect = 9e-35
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 1/225 (0%)

Query: 115 APPSSVNWLGTDDQGRDVLARVIYGFRVSVLFALTLTVLSSIIGVIAGALQGFYGGWVDL 174
           A PS+ +W GTD  GRD+  R + G R+S++  +   +++ +IG + GA  GF GG  D 
Sbjct: 74  AGPSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDR 133

Query: 175 AGQRFLEIWSGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEY 234
              R LEI   +P ++L+I+L +F   N   +   +   +W+ +  +VR + L  R+ E+
Sbjct: 134 VMMRILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEF 193

Query: 235 VRAARALGMQNGAIMFRHILPNAMVSTMTFMPFILTGAIGTLTALDFLGFGLPAGSPSLG 294
           + AA   G+    I+ RHI+PN +     +   ++   I T + L FLG G+     S G
Sbjct: 194 IEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWG 253

Query: 295 ELVAQGKSNLQ-APWLGMSAFAVLAIMLSLLVFIGESARDAFDPR 338
            L+ +G + ++ A W  +   A + + L    ++G+  RDA DP+
Sbjct: 254 ALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298