Pairwise Alignments

Query, 339 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 351 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like from Synechococcus elongatus PCC 7942

 Score =  139 bits (351), Expect = 8e-38
 Identities = 99/355 (27%), Positives = 156/355 (43%), Gaps = 33/355 (9%)

Query: 12  ERFKANKRGW--WSLWLFLSLFVLSLGAELIANDKPLAVHYD---------------GGW 54
           ER     R W  W + L L L++ +LGA+ +A   P +   D               G W
Sbjct: 3   ERRSPLPRSWTSWGVGLLLLLYLGALGADCLAPYNPYSSQADAALLPPSQIFWRNRQGQW 62

Query: 55  YFPALKRYPETTFGGEFPLEANYKSPYIQELLKAKDAWTLWAP-IPFSYQSINYDLKVPA 113
             P +  YP     G   LE   +         A     +W    P+   S   D  +  
Sbjct: 63  LGPHV--YPVRQ--GPIDLETGQREVITD--WNAPSPLRIWVVGDPYRVLSWKGDRHLLG 116

Query: 114 PAPPSSVNWLGTDDQGRDVLARVIYGFRVSVLFALTLTVLSSIIGVIAGALQGFYGGWVD 173
              P  ++ LGTDDQGRD  +R++YG R+S+   L   +L+  +G++ G + G++GGWVD
Sbjct: 117 TTGPGKLHLLGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVD 176

Query: 174 LAGQRFLEIWSGLPVLYLLIILASFVQP------NFWWLLGIMLLFSWMSLVDVVRAEFL 227
               R +E+   +P LYLL+ LA+ + P       F  ++ I  L +W  L  V+R + L
Sbjct: 177 ALIMRLVEVLMTIPSLYLLVALAAVLPPGLSSAERFLLIVAITSLINWAGLARVIRGQVL 236

Query: 228 RGRNLEYVRAARALGMQNGAIMFRHILPNAMVSTMTFMPFILTGAIGTLTALDFLGFGLP 287
             R  EYV+A++ +G     ++ RHILP  +   +      +   I   + L  +G G+ 
Sbjct: 237 SLREREYVQASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPSFIVAESVLSLVGLGIQ 296

Query: 288 AGSPSLG---ELVAQGKSNLQAPWLGMSAFAVLAIMLSLLVFIGESARDAFDPRK 339
              PS G    L       L  PWL      ++ + +     +G+  RD  DPR+
Sbjct: 297 QPDPSWGNMLSLATNASMLLLNPWLIWPPALLIVVAVLAFNVVGDGLRDRLDPRR 351