Pairwise Alignments

Query, 339 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 375 a.a., ABC transporter for D-Raffinose, permease component 1 (from data) from Sinorhizobium meliloti 1021

 Score =  120 bits (300), Expect = 7e-32
 Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 120 VNWLGTDDQGRDVLARVIYGFRVSVLFALTLTVLSSIIGVIAGALQGFYGGWVDLAGQRF 179
           V+ LGTD  GRDVL+R++YG R+S++ ALT+  + +++G   G + G++GG  D   QRF
Sbjct: 149 VHLLGTDKFGRDVLSRILYGSRISLMIALTVVFIVTVVGTTVGMVSGYFGGRFDAWVQRF 208

Query: 180 LEIWSGLPVLYLLIILASFV---QPNFWWLLGIMLLFS---WMSLVDVVRAEFLRGRNLE 233
           +E+    P L L + LAS +    P   +L  ++++ S   W  +   VR + L    +E
Sbjct: 209 VELVLAFPQLPLYLALASLIPVTAPTNVFLAFVIIVMSALGWAQMSREVRGKTLALARIE 268

Query: 234 YVRAARALGMQNGAIMFRHILPNAMVSTMTFMPFILTGAIGTLTALDFLGFGLPAGSPSL 293
           YVRAA A+G  +  I+F+HI PN M   +  +   +   +   + L FLGF +     S 
Sbjct: 269 YVRAAIAIGATDRRIIFQHIFPNVMSHVIVAVTLAIPHVVLLESFLGFLGFAVKPPLISW 328

Query: 294 GELVAQGKSNLQA----PWLGMSAFAVLAIMLSLLVFIGESARDAFDP 337
           G L+ Q  +N  A    PW+ +S  A + + +     +G+  RDA DP
Sbjct: 329 G-LMLQDTANYSAIGSYPWI-LSPVAFVLVTVFAFNALGDGLRDAIDP 374