Pairwise Alignments

Query, 619 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 628 a.a., ABC-type oligopeptide transport system, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  585 bits (1508), Expect = e-171
 Identities = 277/595 (46%), Positives = 408/595 (68%), Gaps = 4/595 (0%)

Query: 2   RLAFSYIFSSTLALLLASSVVIAAPQPYLTVYGEPAKYAAGFTHFDYANPNAPKGGSLRR 61
           R+ F  + +  L+LL  +++  AAP+  LT+Y E  KY A F HF+Y NP+APKGG+LR+
Sbjct: 4   RVRFPLLRAGLLSLLCMATLAEAAPRHALTLYDEKPKYPADFQHFEYVNPDAPKGGTLRQ 63

Query: 62  SAIEIGRFDHVLPYIDKGIGVSQVDGWLYAPLAQRSLDEPYTVYGLVAEKMERADDGLSL 121
           +    G FD + P+I+KG+    +   +Y  L   SLDEP+TVYGL+AEK+E+  +   +
Sbjct: 64  AGF--GSFDSLNPFINKGVAADDIS-LIYDTLTTNSLDEPFTVYGLLAEKIEKGPNNSWV 120

Query: 122 RFFLNPKARFADGKPITAEDVRYSFDLLMTQGSLRFRTLFADVKHVEVEGERQVRFDFSS 181
           RF L P+ARF DG+P+ AEDV ++F+ LM++G+  +R  +ADV+ V  E  R+VRFDF  
Sbjct: 121 RFHLRPQARFHDGEPVKAEDVVFTFETLMSKGAPHYRGYYADVEKVVAESPRRVRFDFKH 180

Query: 182 NENRTLPLDIATLPVFPEHWWKTRDFANGGGYEAPLGSGPYKVSKIDSGSTITFTRDPNW 241
             NR LP+ +  LPV P+HWW+ RDF++G   E PLGSGPY+V KI +G +I + R  ++
Sbjct: 181 AGNRELPMILGQLPVLPKHWWEDRDFSSGS-LEVPLGSGPYRVDKIQAGRSIRYARVEDY 239

Query: 242 WGKDLPVSRGLYNFDHLSLEYFGDTEVARQVLRGGAYDFNREFSATGYSIGYNGPALDDG 301
           WGKDLPV+RG YNFD ++ +Y+ D  VA Q  + G +D+  E SA  ++  Y+  A+ DG
Sbjct: 240 WGKDLPVNRGFYNFDRINFDYYRDNTVALQAFKAGHFDYWFETSAKNWATAYDIAAVRDG 299

Query: 302 RLQRAHLAKEMPQPAQGYVFNVQKPVFKDRRVRQALAMLWDFEWANRQMMRNMYIRQQSF 361
           R+ +  +    P   QG++FN+++P  +DRRVR+AL +L+D+EW NRQ+    Y R +S+
Sbjct: 300 RIVKDEIRNYNPTGMQGFIFNIRRPQLEDRRVREALGLLFDYEWTNRQLFNGAYTRTRSY 359

Query: 362 FSNSPLAATQPPTQEELAILEPLRGQVPDEVFTQVFKAPVTDGSGMIRDKQLQALALLEE 421
           F NS LA++  P  +EL +LEPLRG++PDEVF + F+ P T+G+G+IR++Q QA  LL E
Sbjct: 360 FDNSELASSGLPDADELKVLEPLRGKIPDEVFDKAFELPHTEGNGVIREQQRQAYRLLTE 419

Query: 422 AGWKPHGDKLVNAEGEPLEFTFLNAQSGLERLLLPYKRNLAQIGITLNIRRIDASQYVNR 481
           AGWK   D++++A+ +P++  FL  Q+  ER+LLPYKRNLA +GI L IRR+D SQY+NR
Sbjct: 420 AGWKVENDRMLDAQDKPVKLEFLLVQAEFERVLLPYKRNLADLGIELEIRRVDVSQYINR 479

Query: 482 VMARDYDMIVTGFPVTTSPGMELYNYFGSAAAFDPGANNYMVLKDPAVDSLIKGLVKADT 541
           + +RDYDMIV+GF  + SPG E   Y+ SA+A +PG+ N++ LKDPA+DSL++GL+ AD+
Sbjct: 480 LRSRDYDMIVSGFGQSNSPGNEQREYWHSASADNPGSRNFIGLKDPAIDSLVEGLIGADS 539

Query: 542 QAQMLTYAHALDRVLQWNYLWIPNYYPPGTSAAWWNRFGRPAIEAKNDEALETWW 596
           + +++T+  ALDR L W +  +PN++      A+WN    P +  K D  L TWW
Sbjct: 540 RKELVTHTRALDRALLWGHYVVPNWHIKTWRVAYWNHLAHPQVTPKQDIGLMTWW 594