Pairwise Alignments

Query, 619 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  387 bits (994), Expect = e-112
 Identities = 218/592 (36%), Positives = 318/592 (53%), Gaps = 19/592 (3%)

Query: 12  TLALLLASSVVIAAPQPYLTVYGEPAKYAAGFTHFDYANPNAPKGGSLRRSAIEIGRFDH 71
           TLAL    S         L  +GE AKY   FTHFDY NP APK G +     E+G +D+
Sbjct: 18  TLALSSQFSWAAVIETTRLVGFGE-AKYPENFTHFDYVNPQAPKYGKVTFG--ELGTYDN 74

Query: 72  VLPYIDKGIGVSQVDGWLYAPLAQRSLDEPYTVYGLVAEKMERADDGLSLRFFLNPKARF 131
              +  +G+  +     LY PL     DE  + Y L+A K+  +DD   L   LNP ARF
Sbjct: 75  FNRFASRGVAAANT-AELYDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARF 133

Query: 132 ADGKPITAEDVRYSFDLLMTQGSLRFRTLFADVKHVEVEGERQVRFDFSSNENRTLPLDI 191
            DGKPITA+DV +SF+  M +G  ++R  + DVK V+   ER VR +        L    
Sbjct: 134 HDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLA 193

Query: 192 ATLPVFPEHWWKTRDFANGGGYEAPLGSGPYKVSKIDSGSTITFTRDPNWWGKDLPVSRG 251
            +  V P+H+W+ ++ A     E P+GSG Y++     G ++T+  +P++W KDLPV+ G
Sbjct: 194 QSTRVLPKHYWQYKNLAEPLN-EPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVG 252

Query: 252 LYNFDHLSLEYFGDTEVARQVLRGGAYDFNREFSATGYSIGYNGPALDDGRLQRAHLAKE 311
             NF  +  +Y+ D  V  +  + G +D   E  A  ++  Y G   D G +++  +A +
Sbjct: 253 RNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQ 312

Query: 312 MPQPAQGYVFNVQKPVFKDRRVRQALAMLWDFEWANRQMMRNMYIRQQSFFSNSPLAATQ 371
            P   QG++FN Q+PVF+D RVR+AL    DFEW N+ +  + Y R +S+F N+   A  
Sbjct: 313 APASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQG 372

Query: 372 PPTQEELAILEPLRGQVPDEVFTQVFKAPVTDGSGMIRDKQLQALALLEEAGWKPHGDKL 431
            P   ELA+L P + Q+P  VFT+ ++  VTDGSG IR +  +A ALL+EAGW+     +
Sbjct: 373 LPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVM 432

Query: 432 VNAE-GEPLEFTFLNAQSGLERLLLPYKRNLAQIGITLNIRRIDASQYVNRVMARDYDMI 490
            N + GEPL F  L      ER+ +P ++NL  +GI + IR +D +QY  R+  RD+DMI
Sbjct: 433 TNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMI 492

Query: 491 VTGFPVTTSPGMELY-----NYFGSAAAFDPGANNYMVLKDPAVDSLIKGLVKADTQAQM 545
             GF     P   L      NY  S+     GAN+      P +D+L + + K+    + 
Sbjct: 493 SHGFSANPYPSPNLLIVWNSNYMDSSYN-SAGANH------PVIDALTEQIAKSQQDTEK 545

Query: 546 L-TYAHALDRVLQWNYLWIPNYYPPGTSAAWWNRFGRPAIEAKNDEALETWW 596
           L     ALDRVLQWN+  IP ++      A W++F RP++  K    L+TWW
Sbjct: 546 LRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWW 597