Pairwise Alignments

Query, 353 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  162 bits (411), Expect = 8e-45
 Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 44/349 (12%)

Query: 1   MFAYIVRRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAHLQGIGGGAVGGSSGEGISG 60
           M  +I +R+   IPT+++++ ++F +++ APG P                          
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS------------------------ 36

Query: 61  GSRASRGLDPKLIADIEKQYGFDKPAPERLWLMLKSYAQLDFGNSF-FRGKTVIDLILEK 119
              + R L P+++A+I  +YG DKP  E+    L +  Q DFG SF ++  TV +LI   
Sbjct: 37  ---SERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASA 93

Query: 120 MPVTLSLGLWATLITYLVSIPLGIRKAVRHGSSFDVWSSTAIVIGYAMPAFLFAMFLIVV 179
           +PV++ +GL A + T ++ + +G   A++  +  D    +  ++G  MP+F+ A  LI +
Sbjct: 94  LPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYI 153

Query: 180 FAGGTSLNWFPVRGLVSENFEELSTVGKIADYFWHLVLPVTSLVIGGFATLTILTKNSFL 239
           FA   SL  FP  G     FE             ++ LPV  + +   AT   +T+ S +
Sbjct: 154 FAIQFSL--FPAGGWQDGGFE-------------YMALPVLGMSLLYVATFARITRGSMI 198

Query: 240 NEITRQYVVTARAKGLSERRVLYGHVFRNAMLLVISGIPQAFIAVFFAGSLLIEVIFSLD 299
             +   ++ TARAKGLS   ++  H  + A+L V+S +  AF+ +   GS++IE IF L 
Sbjct: 199 ETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGII-TGSVVIETIFGLP 257

Query: 300 GLGRMSYEAAVSRDYPVVFGSLFIFTLFGLLIKLIGDLCYTLVDPRIDF 348
           G+G++   AA +RDY +V G   +     +L   I D+    +DP+I +
Sbjct: 258 GIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306