Pairwise Alignments

Query, 340 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 300 a.a., Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  142 bits (359), Expect = 8e-39
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 1/224 (0%)

Query: 118 PSAVNWLGTDDQSRDVLARVIFGARVSILFALALTAISAAIGIAAGALQGYYGGWVDLIG 177
           PS V+W GTD+  RDV AR+++G+R+++   L +T I   IG+  G + GY+GGWVD + 
Sbjct: 75  PSGVHWFGTDEYGRDVFARLVYGSRITLYIVLLVTVIVGPIGLLVGTVSGYFGGWVDSLF 134

Query: 178 QRVLEVWSGLPVLYLLIILSGFVEPNFWWLLGIMALFSWLALVDVVRAEFLHGRNLEYVK 237
            R+ +++   P L L +     + P     +  +AL +W  +  + RAE L  RN ++V 
Sbjct: 135 MRITDIFISFPSLVLALAFIAALGPGLEHAVIAIALTAWPPIARLARAETLPLRNADFVV 194

Query: 238 AARALGLGDGKIIRRHILPNAMTATLSYLPFILTGAISTLSALDFLGFGMPAGSASLGEL 297
           A +  G    +II RHI+P  +++ +  L   +   I T +AL FLG G  A     G +
Sbjct: 195 AVQLQGASSTRIILRHIIPMCLSSVIIRLTMNMASIILTAAALGFLGLGAQAPLPEWGAM 254

Query: 298 IAQGKQNLQAPWLGLTAFFTLALILSLLV-FIGEALRDAFDPRS 340
           I+ G++ +   W  + A     +++SL    +G+ LRD  DPRS
Sbjct: 255 ISTGRRYMLESWWLVAAPGAAIMLVSLAFNLLGDGLRDVLDPRS 298