Pairwise Alignments

Query, 340 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  438 bits (1127), Expect = e-128
 Identities = 205/334 (61%), Positives = 268/334 (80%), Gaps = 1/334 (0%)

Query: 5   SPVARRRFERFKKNRRGWWSLWLFIGLFILTLGGELIANDKPLVLSFKNELYFPVFKRYT 64
           +P+   R+ RFK NRRG+WSLW+F+ LF+++L  ELIANDKPL++ +    Y P+ +RY+
Sbjct: 13  NPLTEARWARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYS 72

Query: 65  EQAFGGQLPFQADYRSDYVKKLIEQDGGWMLFPPIPFSDDTPNYELTRPAPSPPSAVNWL 124
           E  FGG+   +ADY   YV  LIE+ G  +++P I F  DT N+++T   PS P +VNWL
Sbjct: 73  ETQFGGEFDTEADYTDPYVVSLIEEKGQ-IIWPLIRFHYDTINFDITGSVPSAPDSVNWL 131

Query: 125 GTDDQSRDVLARVIFGARVSILFALALTAISAAIGIAAGALQGYYGGWVDLIGQRVLEVW 184
           GTDD+ RDVLAR+I+G R+S+LF   LT IS+ IG+  GA QGYYGGW+DL GQR +EVW
Sbjct: 132 GTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVW 191

Query: 185 SGLPVLYLLIILSGFVEPNFWWLLGIMALFSWLALVDVVRAEFLHGRNLEYVKAARALGL 244
           SG+P L+LLIILS FVEPNFWWLLGIM LFSW++LV VVRAEFL  RN +YV+AA+A+G+
Sbjct: 192 SGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGV 251

Query: 245 GDGKIIRRHILPNAMTATLSYLPFILTGAISTLSALDFLGFGMPAGSASLGELIAQGKQN 304
            D +II RH+LPNAM A+L+ +PFIL+G+++TL++LDFLGFG+PAGS SLGEL+AQGK N
Sbjct: 252 SDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKAN 311

Query: 305 LQAPWLGLTAFFTLALILSLLVFIGEALRDAFDP 338
           LQAPWLG++AF  L+++L+LLVFIGEA+RDAFDP
Sbjct: 312 LQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345