Pairwise Alignments

Query, 340 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  134 bits (336), Expect = 4e-36
 Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 118 PSAVNWLGTDDQSRDVLARVIFGARVSILFALALTAISAAIGIAAGALQGYYGGWVDLIG 177
           PSA +W GTD   RD+  R + G R+S++  +    ++  IG   GA  G+ GG  D + 
Sbjct: 76  PSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVM 135

Query: 178 QRVLEVWSGLPVLYLLIILSGFVEPNFWWLLGIMALFSWLALVDVVRAEFLHGRNLEYVK 237
            R+LE+   +P ++L+I+L  F   N   +   +   +WL +  +VR + L  R+ E+++
Sbjct: 136 MRILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIE 195

Query: 238 AARALGLGDGKIIRRHILPNAMTATLSYLPFILTGAISTLSALDFLGFGMPAGSASLGEL 297
           AA   G+    II RHI+PN +     Y   ++   I T S L FLG G+     S G L
Sbjct: 196 AAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGAL 255

Query: 298 IAQGKQNLQ-APWLGLTAFFTLALILSLLVFIGEALRDAFDPR 339
           + +G   ++ A W  L     + L L    ++G+ LRDA DP+
Sbjct: 256 LQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298