Pairwise Alignments

Query, 469 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 474 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  241 bits (614), Expect = 5e-68
 Identities = 170/474 (35%), Positives = 257/474 (54%), Gaps = 45/474 (9%)

Query: 24  IIEQSSEGTVIVDRDANIVWMNERYAKRFGLKSADEAIGQPCEQVISNSLL--RQVVRND 81
           +++  SEG    D D + V++N    +  G + ADE +G+       +S          D
Sbjct: 14  LLDAVSEGIYGFDLDGHAVFINPAAERMTGWQ-ADELLGKTIHNFHHHSHADGSHYPHED 72

Query: 82  QPILLDIQDTPKGPL---VVMR-----LPIHNEA------GAVIGAIGFALFDEL----- 122
            PI   ++D     +   V  R      P+H  +      G + G +  A+F ++     
Sbjct: 73  CPIYQTLKDGKAREISDEVFWRKDGSSFPVHYSSTPVWQDGKLKGVV--AIFRDISLQKQ 130

Query: 123 --RNLSPLIERYLSMQQELASTRSLLRSR-QSKYNFAHFIGTSAASLEVKRRARRSASAE 179
             ++L   +E+  ++ ++LAS  SLL++  + K   +   G+S     ++++ R  A+ +
Sbjct: 131 TEQSLRQALEQVQALSEQLASENSLLQAELEDKRGPSQITGSSDCIQNLQKQIRLVANTD 190

Query: 180 SPVLLLGETGTGKELLAQAIHGASSRAHKAFVSINSAAIPADLLEAEFFGTAPGAFTGAD 239
           S VL+ GE GTGKEL+A+ +H  SSR  K  +S+N AA  A LLE+E FG   GAFTGA 
Sbjct: 191 STVLIQGENGTGKELVARELHQLSSRRDKPMISVNCAAFSASLLESELFGHEKGAFTGAS 250

Query: 240 RKGRPGKFQIAQGGTLFLDEIGDMPLPLQSKLLRVLQEKEFEPVGSNEMLHSDVRVIAAT 299
            + R G+F++A  GTLFLDE+ ++ L  QSKLLRV+QE+EFE VG +E +  D+R+IAAT
Sbjct: 251 NR-RKGRFELAHKGTLFLDEVAELSLEAQSKLLRVIQEQEFERVGGSERIKVDIRLIAAT 309

Query: 300 SMDLEAAIKRGEFRADLYYRLNVLPIQVPPLRERLEDIPALSEAILEELRSQ-----HEL 354
             DL+  +++G FR DL+YRLNV P++VPPLR+R  DIP L + +L  L  +       +
Sbjct: 310 HHDLQKRVEQGLFRMDLFYRLNVFPLKVPPLRQRAGDIPELVQQLLRSLSQKLGKPLAGV 369

Query: 355 DREALALLAQHAWPGNIRELRNVLERAALLSDDLVLDAREIRAAIGTFTPVERASAVAAV 414
           D  +L  L Q++WPGN+REL+N+LER A+L+   VL    I    G+  P      +A V
Sbjct: 370 DAVSLKRLQQYSWPGNVRELQNLLEREAILTHQPVLKMSSIP---GSQMPPVTGQTLAEV 426

Query: 415 EGESFSAARERFDRQVIGAALRACEGNVIEAANRLGLGRSTLYKKMVALDLTQS 468
           E        E  D ++ G       G V   A  LGL  STL  +M  L + +S
Sbjct: 427 EASHILLTLENCDWRISG------PGGV---AAVLGLPPSTLRSRMQKLGIRRS 471