Pairwise Alignments

Query, 220 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 226 a.a., polar amino acid ABC transporter, inner membrane subunit (RefSeq) from Shewanella loihica PV-4

 Score =  110 bits (275), Expect = 2e-29
 Identities = 57/197 (28%), Positives = 110/197 (55%), Gaps = 1/197 (0%)

Query: 21  GFQASVYVSALAIIFGTLIGIVAGLILTYGKFWMRAPFRLYVDLIRGTPVFVLVLACFYM 80
           G + ++ V+  A+I G ++G+   L+    ++++R P  LYV +IRGTPV V ++  +++
Sbjct: 27  GLKVTLIVTLFAMILGAILGVATTLMKMSSRWYLRWPANLYVGVIRGTPVVVQLVILYFI 86

Query: 81  LPALGWQITAFQAGAVGLTLFCGSHVSEIVRGALQAIPRGQLEAGKAIGLTFYQSLGYVL 140
           + A  W +    A  +   L  G+++SEI+R  +QA+ +GQ EA +++GL+   ++  V+
Sbjct: 87  VLAT-WDVDKVSAAIIAFGLNSGAYISEIIRAGIQAVDKGQTEAARSLGLSQAVTMKEVI 145

Query: 141 LPQALRQILPTWVNSSTEIVKASTLLSVIGVAELLLSTQQVIARTFMTLEFYLFAGFMFF 200
           LPQA++ ILP   N    ++K + ++  IG  +L+ S + + +RTF           ++ 
Sbjct: 146 LPQAIKNILPALGNEFIVLLKETAVIGFIGGVDLMRSGEIIRSRTFEDSVPLFTCALIYL 205

Query: 201 VINYAIELFGRYIEKRV 217
            + Y+        EKR+
Sbjct: 206 ALTYSFTFMLSKFEKRL 222